Details for VISDB ID: TVIS10007822

Basic Information

• VISDB ID: TVIS10007822
• Fusion Name: HBV-chr5 integration
• Validated: No
• Curated Way: VISDB1.0
• Method: Next generation sequencing
• Wet Assay: No
• Sample ID: 647
• Sample Name: 647Ca
• Sample Type: Tumor
• Age: -
• Gender: -

Disease Information

• Disease Name: Hepatocellular carcinoma
• Disease Abbreviation: HCC
• Cancer: Yes

Literature

• PubMed ID: 30271481
• Journal: Journal of Cancer
• Published Year: 2018

Human Genome

• Human Genome Version Description: GRCh37/hg19
• Human Genome RefSeq Accession: GCF_000001405.13
• Human Chromosome: chr5
• Cytogenetic Band: q23.3
• Human Strand: -
• Human Integration Location Type: Intergenic
• Hg19 Start: 129935404
• Hg19 End: 129935404
• Hg38 Start: 130599711
• Hg38 End: 130599711
• Junction Sequence: -

Target Gene

• Target Gene: -
• Nearby Gene: ENSG00000249418
• Distance: 932

Virus Information

• Virus Name: Hepatitis B virus
• Virus Subtype Name: -
• Virus Genome Accession: NC_003977
• TaxonomyID: 10407
• Virus Abbreviation: HBV
• Virus Genome: Hepatitis B virus (strain ayw) genome
• Virus Genome Length: 3182
• Virus Breakpoint1: 418
• Virus Breakpoint2: -
• Virus Gene Name: -
• Virus Region Type: S protein|Polymerase|large S protein|middle S protein|
• Integrated Virus Sequence: TCCCCAACCTCCAATCACTCACCAACCTCTTGTCCTCCAACTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGC| |TGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATCAAGGTATGTTGCCCGTTTGTCCTCTAATTCCAGGATCCTCAACAACCAGCACGGGACCATG
• ViMIC ID: -