Details for VISDB ID: TVIS10015927

Basic Information

• VISDB ID: TVIS10015927
• Fusion Name: HBV-LOC105376987 integration
• Validated: Yes
• Curated Way: VISDB1.0
• Method: ligation mediated PCR
• Wet Assay: Yes
• Sample ID: 339
• Sample Name: 339C
• Sample Type: Tumor
• Age: 36
• Gender: -

Disease Information

• Disease Name: Hepatocellular carcinoma
• Disease Abbreviation: HCC
• Cancer: Yes

Literature

• PubMed ID: 22962577
• Journal: PLoS One
• Published Year: 2012

Human Genome

• Human Genome Version Description: GRCh37/hg19
• Human Genome RefSeq Accession: GCF_000001405.13
• Human Chromosome: chr3
• Cytogenetic Band: p24.3
• Human Strand: -
• Human Integration Location Type: Intronic
• Hg19 Start: 21147551
• Hg19 End: 21147551
• Hg38 Start: 21106059
• Hg38 End: 21106059
• Junction Sequence: -

Target Gene

• Target Gene: ENSG00000282987, SGO1-AS1
• Nearby Gene: -
• Distance: -

Virus Information

• Virus Name: Hepatitis B virus
• Virus Subtype Name: -
• Virus Genome Accession: Not given
• TaxonomyID: 10407
• Virus Abbreviation: HBV
• Virus Genome: -
• Virus Genome Length: 0
• Virus Breakpoint1: 1592
• Virus Breakpoint2: -
• Virus Gene Name: -
• Virus Region Type: -
• Integrated Virus Sequence: -
• ViMIC ID: -