Details for VISDB ID: TVIS10016471

Basic Information

• VISDB ID: TVIS10016471
• Fusion Name: HBV-LOC101927709 integration
• Validated: No
• Curated Way: VISDB1.0
• Method: Whole-genome sequencing
• Wet Assay: No
• Sample ID: 31656
• Sample Name: 31656T
• Sample Type: Tumor
• Age: 45
• Gender: -

Disease Information

• Disease Name: Hepatocellular carcinoma
• Disease Abbreviation: HCC
• Cancer: Yes

Literature

• PubMed ID: 22267523
• Journal: Genome Research
• Published Year: 2012

Human Genome

• Human Genome Version Description: GRCh37/hg19
• Human Genome RefSeq Accession: GCF_000001405.13
• Human Chromosome: chr2
• Cytogenetic Band: q14.2
• Human Strand: +
• Human Integration Location Type: Intronic
• Hg19 Start: 119360235
• Hg19 End: 119360270
• Hg38 Start: 118602659
• Hg38 End: 118602694
• Junction Sequence: AGAATATGGAATCTCTACACTCCAGGAGAAAGGTG

Target Gene

• Target Gene: -
• Nearby Gene: -
• Distance: -

Virus Information

• Virus Name: Hepatitis B virus
• Virus Subtype Name: -
• Virus Genome Accession: NC_003977
• TaxonomyID: 10407
• Virus Abbreviation: HBV
• Virus Genome: Hepatitis B virus (strain ayw) genome
• Virus Genome Length: 3182
• Virus Breakpoint1: 1916
• Virus Breakpoint2: 1951
• Virus Gene Name: -
• Virus Region Type: -
• Integrated Virus Sequence: TTATAAAGAATTTGGAGCTACTGTGGAGTTACTCTC
• ViMIC ID: -