Details for VISDB ID: TVIS10049529

Basic Information

• VISDB ID: TVIS10049529
• Fusion Name: HBV-chr13:108482776 integration
• Validated: No
• Curated Way: Curated
• Method: EBV capture sequencing, followed by Viral Integration Pathway Analysis (VIPA) pipeline
• Wet Assay: No
• Sample ID: SRR3104586.1
• Sample Name: SRA335342
• Sample Type: Tumor
• Age: -
• Gender: -

Disease Information

• Disease Name: Hepatocellular carcinoma
• Disease Abbreviation: HCC
• Cancer: Yes

Literature

• PubMed ID: 35968887
• Journal: Clinical and Translational Medicine
• Published Year: 2022

Human Genome

• Human Genome Version Description: GRCh38/hg38
• Human Genome RefSeq Accession: GCF_000001405.40
• Human Chromosome: chr13
• Cytogenetic Band: q33.3
• Human Strand: +
• Human Integration Location Type: intergenic
• Hg19 Start: -
• Hg19 End: -
• Hg38 Start: 108482776
• Hg38 End: 108482776
• Junction Sequence: ttcCGGAACAGTAAACCCTGTTCCGACTACTGCCTCACCCATATCGTCAATCTTCTCGAGGACTGGTTTGTGAAaTATGAAAATTTTCATGAGCTATTAAATTGAATTCTTCATAAGTTAAAATTCAAaatt

Target Gene

• Target Gene: -
• Nearby Gene: HCFC2P1
• Distance: 959

Virus Information

• Virus Name: Hepatitis B virus
• Virus Subtype Name: -
• Virus Genome Accession: AB014381
• TaxonomyID: 10407
• Virus Abbreviation: HBV
• Virus Genome: Hepatitis B virus 22Y04HCC genomic DNA, complete sequence
• Virus Genome Length: 3215 bp
• Virus Breakpoint1: 138
• Virus Breakpoint2: -
• Virus Gene Name: P,S
• Virus Region Type: -
• Integrated Virus Sequence: -
• ViMIC ID: -