Details for VISDB ID: TVIS10054994

Basic Information

• VISDB ID: TVIS10054994
• Fusion Name: HBV-NC_000019.10:28353318 integration
• Validated: No
• Curated Way: Curated
• Method: High-throughput HBV integration sequencing method
• Wet Assay: Yes
• Sample ID: -
• Sample Name: Pt_0503_NT
• Sample Type: Tumor
• Age: 74
• Gender: Female

Disease Information

• Disease Name: -
• Disease Abbreviation: -
• Cancer: -

Literature

• PubMed ID: 37400627
• Journal: Communications Biology
• Published Year: 2023

Human Genome

• Human Genome Version Description: GRCh38/hg38
• Human Genome RefSeq Accession: GCF_000001405.40
• Human Chromosome: NC_000019.10
• Cytogenetic Band: NA
• Human Strand: +
• Human Integration Location Type: intergenic
• Hg19 Start: -
• Hg19 End: -
• Hg38 Start: 28353318
• Hg38 End: 28353368
• Junction Sequence: AAAGCAAAGGGATGATAAAACATACTATGCAAGTAGAAATTTTAAAAGAGC

Target Gene

• Target Gene: -
• Nearby Gene: -
• Distance: -

Virus Information

• Virus Name: Hepatitis B virus
• Virus Subtype Name: HBV genotype D
• Virus Genome Accession: NC_003977.2
• TaxonomyID: 10407
• Virus Abbreviation: HBV
• Virus Genome: Hepatitis B virus (strain ayw) genome
• Virus Genome Length: 3182 bp
• Virus Breakpoint1: 1260
• Virus Breakpoint2: 1457
• Virus Gene Name: ENH1/promoterX,X,pol
• Virus Region Type: -
• Integrated Virus Sequence: -
• ViMIC ID: -