Details for VISDB ID: TVIS10055771

Basic Information

• VISDB ID: TVIS10055771
• Fusion Name: HBV-NC_000020.11:61689643 integration
• Validated: No
• Curated Way: Curated
• Method: High-throughput HBV integration sequencing method
• Wet Assay: Yes
• Sample ID: -
• Sample Name: Pt_0503_T
• Sample Type: Tumor
• Age: 74
• Gender: Female

Disease Information

• Disease Name: Hepatocellular Carcinoma
• Disease Abbreviation: HCC
• Cancer: Yes

Literature

• PubMed ID: 37400627
• Journal: Communications Biology
• Published Year: 2023

Human Genome

• Human Genome Version Description: GRCh38/hg38
• Human Genome RefSeq Accession: GCF_000001405.40
• Human Chromosome: NC_000020.11
• Cytogenetic Band: NA
• Human Strand: +
• Human Integration Location Type: intergenic
• Hg19 Start: -
• Hg19 End: -
• Hg38 Start: 61689643
• Hg38 End: 61689765
• Junction Sequence: TGATGTGGTATTGGCCTGGGACATTGTTTGGTGAAGTGATGTGGAATCAGGCTGGGACAGTGATTGGTGAGGTGATGTGGAATAGGGCTGGGACACTGGTTGGTGAGGTGATGTGGTATTGGG

Target Gene

• Target Gene: -
• Nearby Gene: -
• Distance: -

Virus Information

• Virus Name: Hepatitis B virus
• Virus Subtype Name: HBV genotype D
• Virus Genome Accession: NC_003977.2
• TaxonomyID: 10407
• Virus Abbreviation: HBV
• Virus Genome: Hepatitis B virus (strain ayw) genome
• Virus Genome Length: 3182 bp
• Virus Breakpoint1: 307
• Virus Breakpoint2: 156
• Virus Gene Name: preS1/preS2/S
• Virus Region Type: -
• Integrated Virus Sequence: -
• ViMIC ID: -