Details for VISDB ID: TVIS20010561

Basic Information

• VISDB ID: TVIS20010561
• Fusion Name: HPV-THSD7B integration
• Validated: Yes
• Curated Way: ViMIC
• Method: Detection of integrated papillomavirus sequences-PCR
• Wet Assay: Yes
• Sample ID: #NAME?
• Sample Name: T-038
• Sample Type: Tumor
• Age: -
• Gender: -

Disease Information

• Disease Name: Cervical carcinoma
• Disease Abbreviation: CC
• Cancer: Yes

Literature

• PubMed ID: 29487700
• Journal: Oncotarget
• Published Year: 2018

Human Genome

• Human Genome Version Description: GRCh37/hg19
• Human Genome RefSeq Accession: GCF_000001405.13
• Human Chromosome: chr2
• Cytogenetic Band: q22.1
• Human Integration Location Type: intronic
• Hg19 Start: 138417901
• Hg19 End: 138417902
• Hg38 Start: 137660331
• Hg38 End: 137660332
• Junction Sequence: -

Target Gene

• Target Gene: THSD7B
• Nearby Gene: -
• Distance: -

Virus Information

• Virus Name: Human Papillomavirus
• Virus Subtype Name: HPV16
• Virus Genome Accession: -
• TaxonomyID: 10566
• Virus Abbreviation: HPV
• Virus Genome: -
• Virus Genome Length: -
• Virus Breakpoint1: 2901
• Virus Breakpoint2: -
• Virus Gene Name: E2
• Virus Region Type: -
• Integrated Virus Sequence: -
• ViMIC ID: 5402716