Details for VISDB ID: TVIS20017866

Basic Information

• VISDB ID: TVIS20017866
• Fusion Name: HPV-chr20:39940710 integration
• Validated: No
• Curated Way: Curated
• Method: High-throughput Viral Integration Detection method
• Wet Assay: Yes
• Sample ID: -
• Sample Name: 18O003860
• Sample Type: Tumor-derived tumor samples and cell lines
• Age: -
• Gender: Male

Disease Information

• Disease Name: Penile Squamous Cell Carcinoma
• Disease Abbreviation: PSCC
• Cancer: Yes

Literature

• PubMed ID: 34885212
• Journal: Cancers
• Published Year: 2021

Human Genome

• Human Genome Version Description: GRCh37/hg19
• Human Genome RefSeq Accession: GCF_000001405.13
• Human Chromosome: chr20
• Cytogenetic Band: q12
• Human Strand: +
• Human Integration Location Type: intergenic
• Hg19 Start: 38569352
• Hg19 End: 38569352
• Hg38 Start: 39940710
• Hg38 End: 39940710
• Junction Sequence: -

Target Gene

• Target Gene: -
• Nearby Gene: HSPE1P1
• Distance: 7471

Virus Information

• Virus Name: Human Papillomavirus
• Virus Subtype Name: HpV16
• Virus Genome Accession: AF534061
• TaxonomyID: 10566
• Virus Abbreviation: HPV
• Virus Genome: Human papillomavirus type 16 East Asian type, complete genome
• Virus Genome Length: 7905 bp
• Virus Breakpoint1: 5647
• Virus Breakpoint2: -
• Virus Gene Name: HpV16gp7_L2;HpV16gp8_L1
• Virus Region Type: -
• Integrated Virus Sequence: -
• ViMIC ID: -