Details for VISDB ID: TVIS20019932

Basic Information

• VISDB ID: TVIS20019932
• Fusion Name: HPV-chr3:181861856 integration
• Validated: Yes
• Curated Way: Curated
• Method: Whole genome sequencing, followed by bioinformatic analysis using tools like Hydra, DELLY, and SplazerS
• Wet Assay: Yes
• Sample ID: -
• Sample Name: GS18070
• Sample Type: Tumor-derived tumor samples and cell lines
• Age: -
• Gender: -

Disease Information

• Disease Name: Oropharyngeal Squamous Cell Carcinoma
• Disease Abbreviation: OPSCC
• Cancer: Yes

Literature

• PubMed ID: 34903527
• Journal: Genome Research
• Published Year: 2022

Human Genome

• Human Genome Version Description: GRCh37/hg19
• Human Genome RefSeq Accession: GCF_000001405.13
• Human Chromosome: chr3
• Cytogenetic Band: q26.33
• Human Strand: -
• Human Integration Location Type: intergenic
• Hg19 Start: 181579644
• Hg19 End: 181579645
• Hg38 Start: 181861856
• Hg38 End: 181861857
• Junction Sequence: -

Target Gene

• Target Gene: -
• Nearby Gene: ZCCHC10P1
• Distance: 4495

Virus Information

• Virus Name: Human Papillomavirus
• Virus Subtype Name: HPV33
• Virus Genome Accession: HQ537707.1
• TaxonomyID: 10566
• Virus Abbreviation: HPV
• Virus Genome: Human papillomavirus type 33 isolate Qv34189, complete genome
• Virus Genome Length: 7830 bp
• Virus Breakpoint1: 1049
• Virus Breakpoint2: 1050
• Virus Gene Name: -
• Virus Region Type: -
• Integrated Virus Sequence: -
• ViMIC ID: -