Details for VISDB ID: TVIS20020501

Basic Information

• VISDB ID: TVIS20020501
• Fusion Name: HPV-RN7SKP185 integration
• Validated: Yes
• Curated Way: Curated
• Method: HPV double capture and next-generation sequencing
• Wet Assay: Yes
• Sample ID: -
• Sample Name: R303
• Sample Type: Tumor
• Age: <65 (45); >65 (35)
• Gender: -

Disease Information

• Disease Name: Head and Neck squamous cell carcinoma
• Disease Abbreviation: HNSCC
• Cancer: Yes

Literature

• PubMed ID: 35398964
• Journal: Molecular Oncology
• Published Year: 2022

Human Genome

• Human Genome Version Description: GRCh37/hg19
• Human Genome RefSeq Accession: GCF_000001405.13
• Human Chromosome: chr20
• Cytogenetic Band: q11.23,q12
• Human Integration Location Type: exonic
• Hg19 Start: 36530585
• Hg19 End: 37902183
• Hg38 Start: 37902183
• Hg38 End: 39273540
• Junction Sequence: -

Target Gene

• Target Gene: RN7SKP185, RN7SL237P, ENSG00000277550, ENSG00000277829, ENSG00000275285, ENSG00000224635, ENSG00000275401, SNORA71, SNORA71B, SNORA71A, SNORA71C, SNORA71D, SNORA71, SNHG11, SNORA71E, SNORA60, MIR548O2, RPS3P2, ENSG00000213959, Metazoa_SRP, SLC32A1, RN7SKP173, RN7SL116P, ENSG00000274825, DHX35-DT, ENSG00000277581, NPM1P19, ENSG00000300619, ENSG00000287983, VSTM2L, RPRD1B, KIAA1755, ENSG00000206249, LBP, SNHG17, ADIG, ENSG00000289012, ENSG00000304652, ARHGAP40, ENSG00000301682, ACTR5, ENSG00000297212, PPP1R16B, DHX35, LINC01734, ENSG00000305049, TTI1, TGM2, ENSG00000293724, BPI, ENSG00000285347, ENSG00000285100, RALGAPB, ENSG00000301653, FAM83D, ENSG00000300599
• Nearby Gene: -
• Distance: -

Virus Information

• Virus Name: Human Papillomavirus
• Virus Subtype Name: HPV16
• Virus Genome Accession: NC_028125
• TaxonomyID: 10566
• Virus Abbreviation: HPV
• Virus Genome: Human papillomavirus type 163 isolate KC3, complete genome
• Virus Genome Length: 7233 bp
• Virus Breakpoint1: -
• Virus Breakpoint2: -
• Virus Gene Name: -
• Virus Region Type: -
• Integrated Virus Sequence: -
• ViMIC ID: -