Details for VISDB ID: TVIS20020520

Basic Information

• VISDB ID: TVIS20020520
• Fusion Name: HPV-ENSG00000305042 integration
• Validated: Yes
• Curated Way: Curated
• Method: HPV double capture and next-generation sequencing
• Wet Assay: Yes
• Sample ID: -
• Sample Name: R314
• Sample Type: Tumor
• Age: <65 (45); >65 (35)
• Gender: -

Disease Information

• Disease Name: Head and Neck squamous cell carcinoma
• Disease Abbreviation: HNSCC
• Cancer: Yes

Literature

• PubMed ID: 35398964
• Journal: Molecular Oncology
• Published Year: 2022

Human Genome

• Human Genome Version Description: GRCh37/hg19
• Human Genome RefSeq Accession: GCF_000001405.13
• Human Chromosome: chr2
• Cytogenetic Band: q31.1
• Human Integration Location Type: exonic
• Hg19 Start: 176909119
• Hg19 End: 177773847
• Hg38 Start: 176044391
• Hg38 End: 176909119
• Junction Sequence: -

Target Gene

• Target Gene: ENSG00000305042, ENSG00000309788, HOXD12, HOXD11, HOXD9, ENSG00000298646, HOXD8, MIR10B, HOXD4, ENSG00000272729, ENSG00000309756, HAGLROS, HOXD1, MIR7704, ENSG00000279160, ENSG00000218175, PPIAP67, NRAL, ENSG00000236231, ENSG00000306156, MIR1246, RNU6ATAC14P, FUCA1P1, RPL29P8, ENSG00000279205, ENSG00000306121, EVX2, HOXD13, HOXD10, HOXD-AS2, HAGLR, RPSAP25, ENSG00000307547, ENSG00000306098, ENSG00000306034, LINC01116, ENSG00000227098, MTX2, LINC01117, ENSG00000230552, ENSG00000303534, HOXD3
• Nearby Gene: -
• Distance: -

Virus Information

• Virus Name: Human Papillomavirus
• Virus Subtype Name: HPV16
• Virus Genome Accession: NC_028125
• TaxonomyID: 10566
• Virus Abbreviation: HPV
• Virus Genome: Human papillomavirus type 163 isolate KC3, complete genome
• Virus Genome Length: 7233 bp
• Virus Breakpoint1: -
• Virus Breakpoint2: -
• Virus Gene Name: -
• Virus Region Type: -
• Integrated Virus Sequence: -
• ViMIC ID: -