| Basic Information ▶ | |
| VISDB ID | TVIS20020556 |
|---|---|
| Fusion Name | HPV-RPL32P33 integration |
| Validated | Yes |
| Curated Way | Curated |
| Method | HPV double capture and next-generation sequencing |
| Wet Assay | Yes |
| Sample ID | - |
| Sample Name | R592 |
| Sample Type | Tumor |
| Age | <65 (45); >65 (35) |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Head and Neck squamous cell carcinoma |
| Disease Abbreviation | HNSCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 35398964 |
| Journal | Molecular Oncology |
| Published Year | 2022 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr17 |
| Cytogenetic Band | q24.3,q25.1 |
| Human Strand | |
| Human Integration Location Type | exonic |
| Hg19 Start | 70619523 |
| Hg19 End | 72623384 |
| Hg38 Start | 72623384 |
| Hg38 End | 74627245 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | RPL32P33, ENSG00000302842, ENSG00000263893, RN7SKP180, ENSG00000252274, ENSG00000264196, ATG12P1, POLR3KP2, ENSG00000277728, ENSG00000265010, ENSG00000264750, ENSG00000265935, ENSG00000297340, ENSG00000295965, ENSG00000265927, RPL38, ENSG00000264272, ENSG00000266106, ENSG00000309634, BTBD17, ENSG00000308765, GPR142, ENSG00000302723, ENSG00000303298, RNA5SP448, CD300C, ENSG00000236770, ENSG00000306032, ENSG00000264860, SSTR2, ENSG00000309941, COG1, VCF1, MTNAP1, CPSF4L, CDC42EP4, ENSG00000264985, ENSG00000297572, ENSG00000266765, ENSG00000295102, ENSG00000295064, ENSG00000295082, MGC16275, TTYH2, DNAI2, KIF19, ENSG00000295167, ENSG00000294024, CD300A, CD300LB, ENSG00000289070, CD300H, CD300LD-AS1, CD300E, ENSG00000309557, SLC39A11, LINC02092, LINC00469, ENSG00000285648, ENSG00000288006, LINC02074, CD300LD, LINC00511, SDK2, GPRC5C |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Human Papillomavirus |
| Virus Subtype Name | HPV16 |
| Virus Genome Accession | NC_028125 |
| TaxonomyID | 10566 |
| Virus Abbreviation | HPV |
| Virus Genome | Human papillomavirus type 163 isolate KC3, complete genome |
| Virus Genome Length | 7233 bp |
| Virus Breakpoint1 | - |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D