Details for VISDB ID: TVIS20024851

Basic Information

• VISDB ID: TVIS20024851
• Fusion Name: HPV-LRRC42 integration
• Validated: No
• Curated Way: Curated
• Method: EBV capture sequencing, followed by Viral Integration Pathway Analysis (VIPA) pipeline
• Wet Assay: No
• Sample ID: SRR1611094.166
• Sample Name: SRA189003
• Sample Type: Tumor
• Age: -
• Gender: -

Disease Information

• Disease Name: Cervical cancer
• Disease Abbreviation: CC
• Cancer: Yes

Literature

• PubMed ID: 35968887
• Journal: Clinical and Translational Medicine
• Published Year: 2022

Human Genome

• Human Genome Version Description: GRCh38/hg38
• Human Genome RefSeq Accession: GCF_000001405.40
• Human Chromosome: chr1
• Cytogenetic Band: p32.3
• Human Strand: +
• Human Integration Location Type: intronic
• Hg19 Start: -
• Hg19 End: -
• Hg38 Start: 53955862
• Hg38 End: 53955862
• Junction Sequence: GGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTCATGATTAAATGTGCAGCCCCCACATCCACCCGCACATCGTCTGCAAAACGCAAGTTT

Target Gene

• Target Gene: LRRC42
• Nearby Gene: -
• Distance: -

Virus Information

• Virus Name: Human Papillomavirus
• Virus Subtype Name: HPV33
• Virus Genome Accession: M12732
• TaxonomyID: 10566
• Virus Abbreviation: HPV
• Virus Genome: Human papillomavirus type 33, complete genome
• Virus Genome Length: 7909 bp
• Virus Breakpoint1: 7029
• Virus Breakpoint2: -
• Virus Gene Name: L1
• Virus Region Type: -
• Integrated Virus Sequence: -
• ViMIC ID: -