Details for VISDB ID: TVIS20025689

Basic Information

• VISDB ID: TVIS20025689
• Fusion Name: HPV-chr14:84394285 integration
• Validated: No
• Curated Way: Curated
• Method: Viral capture sequencing (VCS) and whole genome sequencing, followed by analysis using FuseSV
• Wet Assay: Yes
• Sample ID: -
• Sample Name: T171
• Sample Type: Tumor
• Age: -
• Gender: -

Disease Information

• Disease Name: Small cell cervical carcinoma
• Disease Abbreviation: SCCC
• Cancer: Yes

Literature

• PubMed ID: 36216793
• Journal: Nature Communications
• Published Year: 2022

Human Genome

• Human Genome Version Description: GRCh37/hg19
• Human Genome RefSeq Accession: GCF_000001405.13
• Human Chromosome: chr14
• Cytogenetic Band: q31.2
• Human Strand: +
• Human Integration Location Type: intergenic
• Hg19 Start: 84860629
• Hg19 End: 84860629
• Hg38 Start: 84394285
• Hg38 End: 84394285
• Junction Sequence: -

Target Gene

• Target Gene: -
• Nearby Gene: -
• Distance: -

Virus Information

• Virus Name: Human Papillomavirus
• Virus Subtype Name: HPV16
• Virus Genome Accession: NC_001526.4
• TaxonomyID: 10566
• Virus Abbreviation: HPV
• Virus Genome: Human papillomavirus type 16, complete genome
• Virus Genome Length: 7906 bp
• Virus Breakpoint1: 4150
• Virus Breakpoint2: -
• Virus Gene Name: L2
• Virus Region Type: -
• Integrated Virus Sequence: -
• ViMIC ID: -