Details for VISDB ID: TVIS20030758

Basic Information

• VISDB ID: TVIS20030758
• Fusion Name: HPV-chr8:122128516 integration
• Validated: No
• Curated Way: Curated
• Method: Bioinformatic analysis using Polyidus pipeline
• Wet Assay: No
• Sample ID: -
• Sample Name: TCGA-EA-A3HR-01A-11R-A213-07
• Sample Type: TCGA-CESC
• Age: -
• Gender: -

Disease Information

• Disease Name: HPV+ tumor
• Disease Abbreviation: -
• Cancer: Yes

Literature

• PubMed ID: 37365652
• Journal: Genome Biology
• Published Year: 2023

Human Genome

• Human Genome Version Description: GRCh38/hg38
• Human Genome RefSeq Accession: GCF_000001405.40
• Human Chromosome: chr8
• Cytogenetic Band: q24.13
• Human Strand: -
• Human Integration Location Type: intergenic
• Hg19 Start: -
• Hg19 End: -
• Hg38 Start: 122128516
• Hg38 End: 122128517
• Junction Sequence: -

Target Gene

• Target Gene: -
• Nearby Gene: ENSG00000254303
• Distance: 1333

Virus Information

• Virus Name: Human Papillomavirus
• Virus Subtype Name: HPV73
• Virus Genome Accession: -
• TaxonomyID: 10566
• Virus Abbreviation: HPV
• Virus Genome: -
• Virus Genome Length: -
• Virus Breakpoint1: 557
• Virus Breakpoint2: 558
• Virus Gene Name: -
• Virus Region Type: -
• Integrated Virus Sequence: -
• ViMIC ID: -