Details for VISDB ID: TVIS20034888

Basic Information

• VISDB ID: TVIS20034888
• Fusion Name: HPV-chr3:9492348 integration
• Validated: No
• Curated Way: Curated
• Method: High-throughput Viral Integration Detection method
• Wet Assay: Yes
• Sample ID: -
• Sample Name: S065
• Sample Type: Tumor
• Age: 57 = 59; >57 = 50
• Gender: -

Disease Information

• Disease Name: Oropharyngeal squamous cell carcinoma
• Disease Abbreviation: OPSCC
• Cancer: Yes

Literature

• PubMed ID: 38279874
• Journal: Clinical and Translational Medicine
• Published Year: 2024

Human Genome

• Human Genome Version Description: GRCh37/hg19
• Human Genome RefSeq Accession: GCF_000001405.13
• Human Chromosome: chr3
• Cytogenetic Band: p25.3
• Human Strand: +
• Human Integration Location Type: intergenic
• Hg19 Start: 9534032
• Hg19 End: 9534032
• Hg38 Start: 9492348
• Hg38 End: 9492348
• Junction Sequence: TATATGTCTGTATGTGCTTGTATGTGCTTGTAAATATTAAGTTGCGAAACCCCGTCTCTACAAAAAATACCAAAAAATTAGCCAGGCATGGTGGTGCATGCCACCATGCAGTAGTCCCCGCTATTTGGGAGGCAGGAGAAT

Target Gene

• Target Gene: -
• Nearby Gene: LHFPL4
• Distance: 6013

Virus Information

• Virus Name: Human Papillomavirus
• Virus Subtype Name: HPV16
• Virus Genome Accession: AF534061
• TaxonomyID: 10566
• Virus Abbreviation: HPV
• Virus Genome: Human papillomavirus type 16 East Asian type, complete genome
• Virus Genome Length: 7905 bp
• Virus Breakpoint1: 7213
• Virus Breakpoint2: -
• Virus Gene Name: HpV16gp8_L1//downstream
• Virus Region Type: -
• Integrated Virus Sequence: -
• ViMIC ID: -