Details for VISDB ID: TVIS20057004

Basic Information

• VISDB ID: TVIS20057004
• Fusion Name: HPV-FXR1 integration
• Validated: No
• Curated Way: Curated
• Method: High-throughput Viral Integration Detection method
• Wet Assay: Yes
• Sample ID: -
• Sample Name: S100
• Sample Type: Tumor
• Age: 57 = 59; >57 = 50
• Gender: -

Disease Information

• Disease Name: Oropharyngeal squamous cell carcinoma
• Disease Abbreviation: OPSCC
• Cancer: Yes

Literature

• PubMed ID: 38279874
• Journal: Clinical and Translational Medicine
• Published Year: 2024

Human Genome

• Human Genome Version Description: GRCh37/hg19
• Human Genome RefSeq Accession: GCF_000001405.13
• Human Chromosome: chr3
• Cytogenetic Band: q26.33
• Human Strand: +
• Human Integration Location Type: intronic
• Hg19 Start: 180649701
• Hg19 End: 180649701
• Hg38 Start: 180931913
• Hg38 End: 180931913
• Junction Sequence: AACACAGTACATCTCCAAAAAAGATAGGGTTGGGATTTTTTCAAACAAACAAAAACCAACAGCAATGAAAAAACCCCCAAGACTATGAACACGTAGAGAAACCCAGCTGTAATCATGCATGGAGATACACCTACATTGCA

Target Gene

• Target Gene: FXR1
• Nearby Gene: -
• Distance: -

Virus Information

• Virus Name: Human Papillomavirus
• Virus Subtype Name: HPV16
• Virus Genome Accession: AF534061
• TaxonomyID: 10566
• Virus Abbreviation: HPV
• Virus Genome: Human papillomavirus type 16 East Asian type, complete genome
• Virus Genome Length: 7905 bp
• Virus Breakpoint1: 533
• Virus Breakpoint2: -
• Virus Gene Name: HpV16gp1_E6
• Virus Region Type: -
• Integrated Virus Sequence: -
• ViMIC ID: -