Details for VISDB ID: TVIS20068814

Basic Information

• VISDB ID: TVIS20068814
• Fusion Name: HPV-CHCHD2P6 integration
• Validated: No
• Curated Way: Curated
• Method: Nanopore Long-Read Sequencing
• Wet Assay: Yes
• Sample ID: -
• Sample Name: CaSki
• Sample Type: Cell line
• Age: -
• Gender: -

Disease Information

• Disease Name: Cervical Cancer
• Disease Abbreviation: CC
• Cancer: Yes

Literature

• PubMed ID: 38932482
• Journal: Journal of Medical Virology
• Published Year: 2024

Human Genome

• Human Genome Version Description: GRCh38/hg38
• Human Genome RefSeq Accession: GCF_000001405.40
• Human Chromosome: chr1
• Cytogenetic Band: p36.21
• Human Strand: +
• Human Integration Location Type: exonic
• Hg19 Start: -
• Hg19 End: -
• Hg38 Start: 15590354
• Hg38 End: 15849024
• Junction Sequence: -

Target Gene

• Target Gene: CHCHD2P6, RNU7-179P, CD24P1, RSC1A1, ENSG00000271742, SLC25A34, ENSG00000297277, RPL12P14, UQCRHL, ENSG00000178715, DNAJC16, ENSG00000294489, DDI2, SLC25A34-AS1, TMEM82, FBLIM1, SPEN-AS1, ENSG00000237301, SPEN, PLEKHM2, ENSG00000237938
• Nearby Gene: -
• Distance: -

Virus Information

• Virus Name: Human Papillomavirus
• Virus Subtype Name: HPV16
• Virus Genome Accession: gi|333031|lcl|HPV16REF.1|
• TaxonomyID: 10566
• Virus Abbreviation: HPV
• Virus Genome: Human Papillomavirus 16 (HPV16), complete genome
• Virus Genome Length: 7904 bp
• Virus Breakpoint1: 1902
• Virus Breakpoint2: 6906
• Virus Gene Name: NA
• Virus Region Type: -
• Integrated Virus Sequence: -
• ViMIC ID: -