Details for VISDB ID: TVIS20068864

Basic Information

• VISDB ID: TVIS20068864
• Fusion Name: HPV-ENSG00000241462 integration
• Validated: No
• Curated Way: Curated
• Method: Nanopore Long-Read Sequencing
• Wet Assay: Yes
• Sample ID: -
• Sample Name: HPV18 tissue
• Sample Type: Tumor
• Age: -
• Gender: Female

Disease Information

• Disease Name: Cervical Cancer
• Disease Abbreviation: CC
• Cancer: Yes

Literature

• PubMed ID: 38932482
• Journal: Journal of Medical Virology
• Published Year: 2024

Human Genome

• Human Genome Version Description: GRCh38/hg38
• Human Genome RefSeq Accession: GCF_000001405.40
• Human Chromosome: chr17
• Cytogenetic Band: q22,q23.1
• Human Strand: +
• Human Integration Location Type: exonic
• Hg19 Start: -
• Hg19 End: -
• Hg38 Start: 58846268
• Hg38 End: 59860925
• Junction Sequence: -

Target Gene

• Target Gene: ENSG00000241462, Metazoa_SRP, RN7SL716P, RNU2-58P, MIR454, MIR301A, ENSG00000294292, ENSG00000294277, PRR11-AS1, Y_RNA, SNRPGP17, ENSG00000278863, ENSG00000303188, MIR4729, RNU4-13P, ENSG00000273702, ENSG00000308485, MIR21, ENSG00000307176, RNU6-450P, ENSG00000263938, TRIM37, ENSG00000303842, PRR11, SPDYE22P, ENSG00000265303, SMG8, ENSG00000300447, DHX40, ENSG00000297347, PTRH2, TUBD1, PPM1E, ENSG00000224738, SKA2, GDPD1, YPEL2, LINC01476, ENSG00000300461, CLTC, VMP1
• Nearby Gene: -
• Distance: -

Virus Information

• Virus Name: Human Papillomavirus
• Virus Subtype Name: HPV18
• Virus Genome Accession: gi|60975|lcl|HPV18REF.1|
• TaxonomyID: 10566
• Virus Abbreviation: HPV
• Virus Genome: Human Papillomavirus 18 (HPV18), complete genome
• Virus Genome Length: 7857 bp
• Virus Breakpoint1: 4994
• Virus Breakpoint2: 7857
• Virus Gene Name: E2
• Virus Region Type: -
• Integrated Virus Sequence: -
• ViMIC ID: -