Details for VISDB ID: TVIS30015474

Basic Information

• VISDB ID: TVIS30015474
• Fusion Name: HIV-LOC105371777 integration
• Validated: Yes
• Curated Way: VISDB1.0
• Method: ligation mediated PCR
• Wet Assay: Yes
• Sample ID: PT1
• Sample Name: PT1
• Sample Type: PBMC
• Age: 47
• Gender: -

Disease Information

• Disease Name: HIV-infected disease
• Disease Abbreviation: HID
• Cancer: No

Literature

• PubMed ID: 24968937
• Journal: Science
• Published Year: 2014

Human Genome

• Human Genome Version Description: GRCh37/hg19
• Human Genome RefSeq Accession: GCF_000001405.13
• Human Chromosome: chr17
• Cytogenetic Band: q21.2
• Human Strand: -
• Human Integration Location Type: Intronic
• Hg19 Start: 39006596
• Hg19 End: 39006430
• Hg38 Start: 40850344
• Hg38 End: 40850344
• Junction Sequence: AAGCCAGTGTTCCATCAGCCATTTTAAGATAACTCAGTTTTGTATCTATGGTTAGGCGATTGCCTACATACAAAGCACACTTTAATGACGAATTAGAGGATTCCAAGCTTGCCTTTATAAGTGAATATCTACAGATTTTTTTTTCTTATAAATACTACATGGAAAC

Target Gene

• Target Gene: -
• Nearby Gene: ENSG00000265359
• Distance: 456

Virus Information

• Virus Name: Human Immunodeficiency Virus
• Virus Subtype Name: -
• Virus Genome Accession: Not given
• TaxonomyID: 11676
• Virus Abbreviation: HIV
• Virus Genome: -
• Virus Genome Length: 9719
• Virus Breakpoint1: -
• Virus Breakpoint2: -
• Virus Gene Name: -
• Virus Region Type: -
• Integrated Virus Sequence: -
• ViMIC ID: -