Details for VISDB ID: TVIS30015910

Basic Information

• VISDB ID: TVIS30015910
• Fusion Name: HIV-chr20 integration
• Validated: Yes
• Curated Way: VISDB1.0
• Method: ligation mediated PCR
• Wet Assay: Yes
• Sample ID: PT1
• Sample Name: PT1
• Sample Type: PBMC
• Age: 47
• Gender: -

Disease Information

• Disease Name: HIV-infected disease
• Disease Abbreviation: HID
• Cancer: No

Literature

• PubMed ID: 24968937
• Journal: Science
• Published Year: 2014

Human Genome

• Human Genome Version Description: GRCh37/hg19
• Human Genome RefSeq Accession: GCF_000001405.13
• Human Chromosome: chr20
• Cytogenetic Band: p13
• Human Strand: +
• Human Integration Location Type: Intergenic
• Hg19 Start: 4029967
• Hg19 End: 4029987
• Hg38 Start: 4049320
• Hg38 End: 4049320
• Junction Sequence: cagagtttcgctctgtcgct

Target Gene

• Target Gene: -
• Nearby Gene: ENSG00000306206
• Distance: 7576

Virus Information

• Virus Name: Human Immunodeficiency Virus
• Virus Subtype Name: -
• Virus Genome Accession: Not given
• TaxonomyID: 11676
• Virus Abbreviation: HIV
• Virus Genome: -
• Virus Genome Length: 9719
• Virus Breakpoint1: -
• Virus Breakpoint2: -
• Virus Gene Name: -
• Virus Region Type: -
• Integrated Virus Sequence: -
• ViMIC ID: -