Details for VISDB ID: TVIS44001218

Basic Information

• VISDB ID: TVIS44001218
• Fusion Name: HTLV-1-SCAND2P integration
• Validated: No
• Curated Way: VISDB1.0
• Method: High throughput sequenicng
• Wet Assay: No
• Sample ID: ATL11-CR1
• Sample Name: ATL11-CR1
• Sample Type: Nontumor
• Age: 27
• Gender: -

Disease Information

• Disease Name: Adult T-cell leukemia
• Disease Abbreviation: ATL
• Cancer: Yes

Literature

• PubMed ID: 28811663
• Journal: Leukemia
• Published Year: 2017

Human Genome

• Human Genome Version Description: GRCh37/hg19
• Human Genome RefSeq Accession: GCF_000001405.13
• Human Chromosome: chr15
• Cytogenetic Band: q25.2
• Human Strand: -
• Human Integration Location Type: ncRNA_exonic
• Hg19 Start: 85183182
• Hg19 End: 85183182
• Hg38 Start: 84639951
• Hg38 End: 84639951
• Junction Sequence: -

Target Gene

• Target Gene: ENSG00000291159, SCAND2P, WDR73
• Nearby Gene: -
• Distance: -

Virus Information

• Virus Name: Human T-lymphotropic Virus
• Virus Subtype Name: -
• Virus Genome Accession: Not given
• TaxonomyID: 11908
• Virus Abbreviation: HTLV-1
• Virus Genome: -
• Virus Genome Length: 9046
• Virus Breakpoint1: -
• Virus Breakpoint2: -
• Virus Gene Name: -
• Virus Region Type: -
• Integrated Virus Sequence: -
• ViMIC ID: -