Details for VISDB ID: TVIS44019103

Basic Information

• VISDB ID: TVIS44019103
• Fusion Name: HTLV-1-chr3 integration
• Validated: No
• Curated Way: VISDB1.0
• Method: High throughput sequenicng
• Wet Assay: No
• Sample ID: HAM/TSP#2
• Sample Name: HAM/TSP#2
• Sample Type: Nontumor
• Age: -
• Gender: -

Disease Information

• Disease Name: HTLV-1 associated myelopathy/tropical spastic paraparesis
• Disease Abbreviation: -
• Cancer: No

Literature

• PubMed ID: 29186194
• Journal: PLOS Pathogens
• Published Year: 2017

Human Genome

• Human Genome Version Description: GRCh37/hg19
• Human Genome RefSeq Accession: GCF_000001405.13
• Human Chromosome: chr3
• Cytogenetic Band: p21.31
• Human Strand: -
• Human Integration Location Type: Intergenic
• Hg19 Start: 45428218
• Hg19 End: 45428218
• Hg38 Start: 45386726
• Hg38 End: 45386726
• Junction Sequence: -

Target Gene

• Target Gene: -
• Nearby Gene: LARS2
• Distance: 1835

Virus Information

• Virus Name: Human T-lymphotropic Virus
• Virus Subtype Name: -
• Virus Genome Accession: Not given
• TaxonomyID: 11908
• Virus Abbreviation: HTLV-1
• Virus Genome: -
• Virus Genome Length: 9046
• Virus Breakpoint1: -
• Virus Breakpoint2: -
• Virus Gene Name: -
• Virus Region Type: -
• Integrated Virus Sequence: -
• ViMIC ID: -