rs11682667

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0135 (4055/29984,GnomAD)
C=0126 (3671/29118,TOPMED)
C=0150 (749/5008,1000G)
C=0152 (586/3854,ALSPAC)
C=0156 (579/3708,TWINSUK)
chr2:129061896 (GRCh38.p7) (2q14.3)
AD
GWASdb2
1   publication(s)
See rs on genome
19 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 2NC_000002.12:g.129061896T>C
GRCh37.p13 chr 2NC_000002.11:g.129819469T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.907C=0.093
1000GenomesAmericanSub694T=0.780C=0.220
1000GenomesEast AsianSub1008T=0.772C=0.228
1000GenomesEuropeSub1006T=0.876C=0.124
1000GenomesGlobalStudy-wide5008T=0.850C=0.150
1000GenomesSouth AsianSub978T=0.880C=0.120
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.848C=0.152
The Genome Aggregation DatabaseAfricanSub8732T=0.899C=0.101
The Genome Aggregation DatabaseAmericanSub838T=0.710C=0.290
The Genome Aggregation DatabaseEast AsianSub1616T=0.777C=0.223
The Genome Aggregation DatabaseEuropeSub18496T=0.863C=0.136
The Genome Aggregation DatabaseGlobalStudy-wide29984T=0.864C=0.135
The Genome Aggregation DatabaseOtherSub302T=0.840C=0.160
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.873C=0.126
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.844C=0.156
PMID Title Author Journal
23089632A genome-wide association study of alcohol-dependence symptom counts in extended pedigrees identifies C15orf53.Wang JCMol Psychiatry

P-Value

SNP ID p-value Traits Study
rs116826677.06E-06alcohol dependence23089632

eQTL of rs11682667 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs11682667 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr2129816620129816851E081-2618
chr2129816862129817043E081-2426
chr2129817169129817346E081-2123
chr2129817482129817532E081-1937
chr2129818688129818933E081-536
chr2129819138129819273E081-196
chr2129819325129820011E0810
chr2129820015129820096E081546
chr2129820167129820285E081698
chr2129820795129820907E0811326
chr2129820966129821048E0811497
chr2129825698129825803E0816229
chr2129844236129844415E08124767
chr2129844813129845306E08125344
chr2129819138129819273E082-196
chr2129819325129820011E0820
chr2129820015129820096E082546
chr2129820167129820285E082698
chr2129844813129845306E08225344