Cancer Cell Metabolism Gene Database

  Cancer Cell Metabolism Gene DB

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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory
Cross referenced IDs for 1656
* We obtained these cross-references from Uniprot database. It covers 150 different DBs, 18 categories. http://www.uniprot.org/help/cross_references_section
DB CategoryDB NameDB's ID and Url link
Genome annotation databasesEnsembl ENST00000526070; ENSP00000433704; ENSG00000110367.
Genome annotation databasesEnsembl ENST00000534980; ENSP00000442266; ENSG00000110367.
Genome annotation databasesEnsembl ENST00000620157; ENSP00000478754; ENSG00000110367.
Genome annotation databasesGeneID 1656; -.
Genome annotation databasesKEGG hsa:1656; -.
Genome annotation databasesUCSC uc001pub.2; human.
Sequence databasesCCDS CCDS44751.1; -.
Sequence databasesEMBL Z11685; -; NOT_ANNOTATED_CDS; mRNA.
Sequence databasesEMBL BC065007; AAH65007.1; -; mRNA.
Sequence databasesEMBL D17532; BAA04482.1; -; mRNA.
Sequence databasesPIR S22651; S22651.
Sequence databasesRefSeq NP_001244120.1; NM_001257191.2.
Sequence databasesRefSeq NP_004388.2; NM_004397.5.
Sequence databasesRefSeq XP_005271474.1; XM_005271417.2.
Sequence databasesUniGene Hs.408461; -.
Polymorphism databasesDMDM 116241327; -.
Gene expression databasesBgee P26196; -.
Gene expression databasesCleanEx HS_DDX6; -.
Gene expression databasesExpressionAtlas P26196; baseline and differential.
Gene expression databasesGenevestigator P26196; -.
OntologiesGO GO:0005737; C:cytoplasm; IDA:HPA.
OntologiesGO GO:0000932; C:cytoplasmic mRNA processing body; IDA:UniProtKB.
OntologiesGO GO:0010494; C:cytoplasmic stress granule; IDA:UniProtKB.
OntologiesGO GO:0005829; C:cytosol; TAS:Reactome.
OntologiesGO GO:0043231; C:intracellular membrane-bounded organelle; IDA:HPA.
OntologiesGO GO:0016020; C:membrane; IDA:UniProtKB.
OntologiesGO GO:0016442; C:RISC complex; IDA:MGI.
OntologiesGO GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
OntologiesGO GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.
OntologiesGO GO:0004386; F:helicase activity; TAS:ProtInc.
OntologiesGO GO:0044822; F:poly(A) RNA binding; IDA:UniProtKB.
OntologiesGO GO:0003724; F:RNA helicase activity; TAS:ProtInc.
OntologiesGO GO:0033962; P:cytoplasmic mRNA processing body assembly; IDA:MGI.
OntologiesGO GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.
OntologiesGO GO:0010467; P:gene expression; TAS:Reactome.
OntologiesGO GO:0016071; P:mRNA metabolic process; TAS:Reactome.
OntologiesGO GO:0000288; P:nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay; TAS:Reactome.
OntologiesGO GO:0016070; P:RNA metabolic process; TAS:Reactome.
Proteomic databasesMaxQB P26196; -.
Proteomic databasesPaxDb P26196; -.
Proteomic databasesPeptideAtlas P26196; -.
Proteomic databasesPRIDE P26196; -.
Family and domain databasesGene3D 3.40.50.300; -; 2.
Family and domain databasesInterPro IPR011545; DEAD/DEAH_box_helicase_dom.
Family and domain databasesInterPro IPR014001; Helicase_ATP-bd.
Family and domain databasesInterPro IPR001650; Helicase_C.
Family and domain databasesInterPro IPR027417; P-loop_NTPase.
Family and domain databasesInterPro IPR000629; RNA-helicase_DEAD-box_CS.
Family and domain databasesInterPro IPR014014; RNA_helicase_DEAD_Q_motif.
Family and domain databasesPfam PF00270; DEAD; 1.
Family and domain databasesPfam PF00271; Helicase_C; 1.
Family and domain databasesPROSITE PS00039; DEAD_ATP_HELICASE; 1.
Family and domain databasesPROSITE PS51192; HELICASE_ATP_BIND_1; 1.
Family and domain databasesPROSITE PS51194; HELICASE_CTER; 1.
Family and domain databasesPROSITE PS51195; Q_MOTIF; 1.
Family and domain databasesSMART SM00487; DEXDc; 1.
Family and domain databasesSMART SM00490; HELICc; 1.
Family and domain databasesSUPFAM SSF52540; SSF52540; 1.
PTM databasesPhosphoSite P26196; -.
Protein-protein interaction databasesBioGrid 108022; 47.
Protein-protein interaction databasesDIP DIP-29195N; -.
Protein-protein interaction databasesIntAct P26196; 33.
Protein-protein interaction databasesMINT MINT-5004149; -.
Protein-protein interaction databasesSTRING 9606.ENSP00000264018; -.
Enzyme and pathway databasesReactome REACT_20518; mRNA decay by 5' to 3' exoribonuclease.
2D gel databasesDOSAC-COBS-2DPAGE P26196; -.
3D structure databasesPDB 1VEC; X-ray; 2.01 A; A/B=94-299.
3D structure databasesPDB 2WAX; X-ray; 2.30 A; A/C=296-483.
3D structure databasesPDB 2WAY; X-ray; 2.30 A; A/C=296-483.
3D structure databasesPDB 4CRW; X-ray; 1.75 A; B=307-483.
3D structure databasesPDB 4CT4; X-ray; 2.30 A; B/D=95-469.
3D structure databasesPDB 4CT5; X-ray; 3.00 A; A/B=95-469.
3D structure databasesPDBsum 1VEC; -.
3D structure databasesPDBsum 2WAX; -.
3D structure databasesPDBsum 2WAY; -.
3D structure databasesPDBsum 4CRW; -.
3D structure databasesPDBsum 4CT4; -.
3D structure databasesPDBsum 4CT5; -.
3D structure databasesProteinModelPortal P26196; -.
3D structure databasesSMR P26196; 63-469.
Protocols and materials databasesDNASU 1656; -.
Phylogenomic databaseseggNOG COG0513; -.
Phylogenomic databasesGeneTree ENSGT00740000115573; -.
Phylogenomic databasesHOGENOM HOG000268797; -.
Phylogenomic databasesHOVERGEN HBG106685; -.
Phylogenomic databasesInParanoid P26196; -.
Phylogenomic databasesKO K12614; -.
Phylogenomic databasesOMA LLQFHPK; -.
Phylogenomic databasesOrthoDB EOG7D85W7; -.
Phylogenomic databasesPhylomeDB P26196; -.
Phylogenomic databasesTreeFam TF300440; -.
Organism-specific databasesCTD 1656; -.
Organism-specific databasesGeneCards GC11M118619; -.
Organism-specific databasesHGNC HGNC:2747; DDX6.
Organism-specific databasesHPA CAB004668; -.
Organism-specific databasesHPA HPA024201; -.
Organism-specific databasesHPA HPA026644; -.
Organism-specific databasesMIM 600326; gene.
Organism-specific databasesneXtProt NX_P26196; -.
Organism-specific databasesPharmGKB PA27229; -.
OtherChiTaRS DDX6; human.
OtherEvolutionaryTrace P26196; -.
OtherGeneWiki DDX6; -.
OtherGenomeRNAi 1656; -.
OtherNextBio 6820; -.
OtherPRO PR:P26196; -.



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