Cancer Cell Metabolism Gene Database

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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory
Cross referenced IDs for 1789
* We obtained these cross-references from Uniprot database. It covers 150 different DBs, 18 categories. http://www.uniprot.org/help/cross_references_section
DB CategoryDB NameDB's ID and Url link
Genome annotation databasesEnsembl ENST00000201963; ENSP00000201963; ENSG00000088305. [Q9UBC3-6]
Genome annotation databasesEnsembl ENST00000328111; ENSP00000328547; ENSG00000088305. [Q9UBC3-1]
Genome annotation databasesEnsembl ENST00000348286; ENSP00000337764; ENSG00000088305. [Q9UBC3-3]
Genome annotation databasesEnsembl ENST00000353855; ENSP00000313397; ENSG00000088305. [Q9UBC3-2]
Genome annotation databasesEnsembl ENST00000443239; ENSP00000403169; ENSG00000088305. [Q9UBC3-8]
Genome annotation databasesEnsembl ENST00000456297; ENSP00000412305; ENSG00000088305. [Q9UBC3-7]
Genome annotation databasesGeneID 1789; -.
Genome annotation databasesKEGG hsa:1789; -.
Genome annotation databasesUCSC uc002wyc.3; human. [Q9UBC3-1]
Genome annotation databasesUCSC uc002wyd.3; human. [Q9UBC3-2]
Genome annotation databasesUCSC uc002wye.3; human. [Q9UBC3-3]
Genome annotation databasesUCSC uc002wyf.3; human. [Q9UBC3-6]
Sequence databasesCCDS CCDS13204.1; -. [Q9UBC3-6]
Sequence databasesCCDS CCDS13205.1; -. [Q9UBC3-1]
Sequence databasesCCDS CCDS13206.1; -. [Q9UBC3-2]
Sequence databasesCCDS CCDS13207.1; -. [Q9UBC3-3]
Sequence databasesCCDS CCDS56183.1; -. [Q9UBC3-8]
Sequence databasesCCDS CCDS56184.1; -. [Q9UBC3-7]
Sequence databasesEMBL AF156487; AAD53062.1; -; mRNA.
Sequence databasesEMBL AF156488; AAD53063.1; -; mRNA.
Sequence databasesEMBL AF176228; AAF04015.1; -; mRNA.
Sequence databasesEMBL AF331857; AAL57040.1; -; mRNA.
Sequence databasesEMBL AK299821; BAG61690.1; -; mRNA.
Sequence databasesEMBL AK299915; BAG61753.1; -; mRNA.
Sequence databasesEMBL AL035071; CAB53069.1; -; Genomic_DNA.
Sequence databasesEMBL AL035071; CAB53070.1; -; Genomic_DNA.
Sequence databasesEMBL AL035071; CAB53071.1; -; Genomic_DNA.
Sequence databasesEMBL AL035071; CAM27373.1; -; Genomic_DNA.
Sequence databasesEMBL CH471077; EAW76351.1; -; Genomic_DNA.
Sequence databasesEMBL CH471077; EAW76352.1; -; Genomic_DNA.
Sequence databasesEMBL CH471077; EAW76353.1; -; Genomic_DNA.
Sequence databasesEMBL CH471077; EAW76354.1; -; Genomic_DNA.
Sequence databasesEMBL CH471077; EAW76356.1; -; Genomic_DNA.
Sequence databasesEMBL AF129267; AAD31432.1; -; mRNA.
Sequence databasesEMBL AF129268; AAD31433.1; -; mRNA.
Sequence databasesEMBL AF129269; AAD31434.1; -; mRNA.
Sequence databasesRefSeq NP_001193984.1; NM_001207055.1. [Q9UBC3-8]
Sequence databasesRefSeq NP_001193985.1; NM_001207056.1. [Q9UBC3-7]
Sequence databasesRefSeq NP_008823.1; NM_006892.3. [Q9UBC3-1]
Sequence databasesRefSeq NP_787044.1; NM_175848.1. [Q9UBC3-2]
Sequence databasesRefSeq NP_787045.1; NM_175849.1. [Q9UBC3-3]
Sequence databasesRefSeq NP_787046.1; NM_175850.2. [Q9UBC3-6]
Sequence databasesUniGene Hs.643024; -.
Sequence databasesUniGene Hs.713611; -.
Polymorphism databasesDMDM 17375667; -.
Gene expression databasesBgee Q9UBC3; -.
Gene expression databasesCleanEx HS_DNMT3B; -.
Gene expression databasesGenevestigator Q9UBC3; -.
OntologiesGO GO:0000775; C:chromosome, centromeric region; IEA:Ensembl.
OntologiesGO GO:0005737; C:cytoplasm; IEA:Ensembl.
OntologiesGO GO:0043231; C:intracellular membrane-bounded organelle; IDA:HPA.
OntologiesGO GO:0005720; C:nuclear heterochromatin; IEA:Ensembl.
OntologiesGO GO:0005634; C:nucleus; IDA:UniProtKB.
OntologiesGO GO:0003886; F:DNA (cytosine-5-)-methyltransferase activity; NAS:UniProtKB.
OntologiesGO GO:0051718; F:DNA (cytosine-5-)-methyltransferase activity, acting on CpG substrates; IEA:Ensembl.
OntologiesGO GO:0009008; F:DNA-methyltransferase activity; NAS:UniProtKB.
OntologiesGO GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
OntologiesGO GO:0003714; F:transcription corepressor activity; IDA:UniProtKB.
OntologiesGO GO:0045322; F:unmethylated CpG binding; IEA:Ensembl.
OntologiesGO GO:0090116; P:C-5 methylation of cytosine; IDA:GOC.
OntologiesGO GO:0071230; P:cellular response to amino acid stimulus; IEA:Ensembl.
OntologiesGO GO:0006306; P:DNA methylation; NAS:UniProtKB.
OntologiesGO GO:0043045; P:DNA methylation involved in embryo development; IEA:Ensembl.
OntologiesGO GO:0010424; P:DNA methylation on cytosine within a CG sequence; IEA:Ensembl.
OntologiesGO GO:0006346; P:methylation-dependent chromatin silencing; IEA:Ensembl.
OntologiesGO GO:0051573; P:negative regulation of histone H3-K9 methylation; IMP:UniProtKB.
OntologiesGO GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; IDA:UniProtKB.
OntologiesGO GO:0010628; P:positive regulation of gene expression; IMP:UniProtKB.
OntologiesGO GO:0051571; P:positive regulation of histone H3-K4 methylation; IMP:UniProtKB.
OntologiesGO GO:0045666; P:positive regulation of neuron differentiation; IEA:Ensembl.
OntologiesGO GO:0031503; P:protein complex localization; IEA:Ensembl.
OntologiesGO GO:0006349; P:regulation of gene expression by genetic imprinting; IEA:Ensembl.
OntologiesGO GO:0042493; P:response to drug; IEA:Ensembl.
OntologiesGO GO:0010212; P:response to ionizing radiation; IEA:Ensembl.
OntologiesGO GO:0046498; P:S-adenosylhomocysteine metabolic process; IEA:Ensembl.
OntologiesGO GO:0046499; P:S-adenosylmethioninamine metabolic process; IEA:Ensembl.
Proteomic databasesMaxQB Q9UBC3; -.
Proteomic databasesPaxDb Q9UBC3; -.
Proteomic databasesPRIDE Q9UBC3; -.
Protein family/group databasesREBASE 4120; M.HsaDnmt3B.
Family and domain databasesGene3D 3.40.50.150; -; 1.
Family and domain databasesInterPro IPR025766; ADD.
Family and domain databasesInterPro IPR018117; C5_DNA_meth_AS.
Family and domain databasesInterPro IPR001525; C5_MeTfrase.
Family and domain databasesInterPro IPR025811; C5_MeTrfase_3.
Family and domain databasesInterPro IPR000313; PWWP_dom.
Family and domain databasesInterPro IPR029063; SAM-dependent_MTases-like.
Family and domain databasesInterPro IPR011011; Znf_FYVE_PHD.
Family and domain databasesPfam PF00145; DNA_methylase; 1.
Family and domain databasesPfam PF00855; PWWP; 1.
Family and domain databasesPROSITE PS51533; ADD; 1.
Family and domain databasesPROSITE PS00094; C5_MTASE_1; 1.
Family and domain databasesPROSITE PS50812; PWWP; 1.
Family and domain databasesPROSITE PS51679; SAM_MT_C5; 1.
Family and domain databasesSMART SM00293; PWWP; 1.
Family and domain databasesSUPFAM SSF53335; SSF53335; 1.
Family and domain databasesSUPFAM SSF57903; SSF57903; 1.
PTM databasesPhosphoSite Q9UBC3; -.
Protein-protein interaction databasesBioGrid 108126; 66.
Protein-protein interaction databasesDIP DIP-30000N; -.
Protein-protein interaction databasesIntAct Q9UBC3; 23.
Protein-protein interaction databasesMINT MINT-2820816; -.
Protein-protein interaction databasesSTRING 9606.ENSP00000328547; -.
Enzyme and pathway databasesReactome REACT_200808; PRC2 methylates histones and DNA.
Enzyme and pathway databasesReactome REACT_200856; NoRC negatively regulates rRNA expression.
Enzyme and pathway databasesReactome REACT_267652; DNA methylation.
3D structure databasesPDB 3FLG; X-ray; 1.80 A; A=206-355.
3D structure databasesPDB 3QKJ; X-ray; 2.04 A; A/B/C/D=206-355.
3D structure databasesPDBsum 3FLG; -.
3D structure databasesPDBsum 3QKJ; -.
3D structure databasesProteinModelPortal Q9UBC3; -.
3D structure databasesSMR Q9UBC3; 216-350, 415-852.
Protocols and materials databasesDNASU 1789; -.
Phylogenomic databaseseggNOG NOG70699; -.
Phylogenomic databasesGeneTree ENSGT00390000008341; -.
Phylogenomic databasesHOVERGEN HBG051381; -.
Phylogenomic databasesInParanoid Q9UBC3; -.
Phylogenomic databasesKO K17399; -.
Phylogenomic databasesOMA LEWAHGG; -.
Phylogenomic databasesOrthoDB EOG7MWGW6; -.
Phylogenomic databasesPhylomeDB Q9UBC3; -.
Phylogenomic databasesTreeFam TF329039; -.
Organism-specific databasesCTD 1789; -.
Organism-specific databasesGeneCards GC20P031350; -.
Organism-specific databasesHGNC HGNC:2979; DNMT3B.
Organism-specific databasesHPA HPA001595; -.
Organism-specific databasesMIM 242860; phenotype.
Organism-specific databasesMIM 602900; gene.
Organism-specific databasesneXtProt NX_Q9UBC3; -.
Organism-specific databasesOrphanet 2268; ICF syndrome.
Organism-specific databasesPharmGKB PA27446; -.
ChemistryBindingDB Q9UBC3; -.
ChemistryChEMBL CHEMBL6095; -.
OtherChiTaRS DNMT3B; human.
OtherEvolutionaryTrace Q9UBC3; -.
OtherGeneWiki DNMT3B; -.
OtherGenomeRNAi 1789; -.
OtherNextBio 7289; -.
OtherPRO PR:Q9UBC3; -.
Genome annotation databasesEnsembl ENST00000201963; ENSP00000201963; ENSG00000088305. [Q9UBC3-6]
Genome annotation databasesEnsembl ENST00000328111; ENSP00000328547; ENSG00000088305. [Q9UBC3-1]
Genome annotation databasesEnsembl ENST00000348286; ENSP00000337764; ENSG00000088305. [Q9UBC3-3]
Genome annotation databasesEnsembl ENST00000353855; ENSP00000313397; ENSG00000088305. [Q9UBC3-2]
Genome annotation databasesEnsembl ENST00000443239; ENSP00000403169; ENSG00000088305. [Q9UBC3-8]
Genome annotation databasesEnsembl ENST00000456297; ENSP00000412305; ENSG00000088305. [Q9UBC3-7]
Genome annotation databasesGeneID 1789; -.
Genome annotation databasesKEGG hsa:1789; -.
Genome annotation databasesUCSC uc002wyc.3; human. [Q9UBC3-1]
Genome annotation databasesUCSC uc002wyd.3; human. [Q9UBC3-2]
Genome annotation databasesUCSC uc002wye.3; human. [Q9UBC3-3]
Genome annotation databasesUCSC uc002wyf.3; human. [Q9UBC3-6]
Sequence databasesCCDS CCDS13204.1; -. [Q9UBC3-6]
Sequence databasesCCDS CCDS13205.1; -. [Q9UBC3-1]
Sequence databasesCCDS CCDS13206.1; -. [Q9UBC3-2]
Sequence databasesCCDS CCDS13207.1; -. [Q9UBC3-3]
Sequence databasesCCDS CCDS56183.1; -. [Q9UBC3-8]
Sequence databasesCCDS CCDS56184.1; -. [Q9UBC3-7]
Sequence databasesEMBL AF156487; AAD53062.1; -; mRNA.
Sequence databasesEMBL AF156488; AAD53063.1; -; mRNA.
Sequence databasesEMBL AF176228; AAF04015.1; -; mRNA.
Sequence databasesEMBL AF331857; AAL57040.1; -; mRNA.
Sequence databasesEMBL AK299821; BAG61690.1; -; mRNA.
Sequence databasesEMBL AK299915; BAG61753.1; -; mRNA.
Sequence databasesEMBL AL035071; CAB53069.1; -; Genomic_DNA.
Sequence databasesEMBL AL035071; CAB53070.1; -; Genomic_DNA.
Sequence databasesEMBL AL035071; CAB53071.1; -; Genomic_DNA.
Sequence databasesEMBL AL035071; CAM27373.1; -; Genomic_DNA.
Sequence databasesEMBL CH471077; EAW76351.1; -; Genomic_DNA.
Sequence databasesEMBL CH471077; EAW76352.1; -; Genomic_DNA.
Sequence databasesEMBL CH471077; EAW76353.1; -; Genomic_DNA.
Sequence databasesEMBL CH471077; EAW76354.1; -; Genomic_DNA.
Sequence databasesEMBL CH471077; EAW76356.1; -; Genomic_DNA.
Sequence databasesEMBL AF129267; AAD31432.1; -; mRNA.
Sequence databasesEMBL AF129268; AAD31433.1; -; mRNA.
Sequence databasesEMBL AF129269; AAD31434.1; -; mRNA.
Sequence databasesRefSeq NP_001193984.1; NM_001207055.1. [Q9UBC3-8]
Sequence databasesRefSeq NP_001193985.1; NM_001207056.1. [Q9UBC3-7]
Sequence databasesRefSeq NP_008823.1; NM_006892.3. [Q9UBC3-1]
Sequence databasesRefSeq NP_787044.1; NM_175848.1. [Q9UBC3-2]
Sequence databasesRefSeq NP_787045.1; NM_175849.1. [Q9UBC3-3]
Sequence databasesRefSeq NP_787046.1; NM_175850.2. [Q9UBC3-6]
Sequence databasesUniGene Hs.643024; -.
Sequence databasesUniGene Hs.713611; -.
Polymorphism databasesDMDM 17375667; -.
Gene expression databasesBgee Q9UBC3; -.
Gene expression databasesCleanEx HS_DNMT3B; -.
Gene expression databasesGenevestigator Q9UBC3; -.
OntologiesGO GO:0000775; C:chromosome, centromeric region; IEA:Ensembl.
OntologiesGO GO:0005737; C:cytoplasm; IEA:Ensembl.
OntologiesGO GO:0043231; C:intracellular membrane-bounded organelle; IDA:HPA.
OntologiesGO GO:0005720; C:nuclear heterochromatin; IEA:Ensembl.
OntologiesGO GO:0005634; C:nucleus; IDA:UniProtKB.
OntologiesGO GO:0003886; F:DNA (cytosine-5-)-methyltransferase activity; NAS:UniProtKB.
OntologiesGO GO:0051718; F:DNA (cytosine-5-)-methyltransferase activity, acting on CpG substrates; IEA:Ensembl.
OntologiesGO GO:0009008; F:DNA-methyltransferase activity; NAS:UniProtKB.
OntologiesGO GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
OntologiesGO GO:0003714; F:transcription corepressor activity; IDA:UniProtKB.
OntologiesGO GO:0045322; F:unmethylated CpG binding; IEA:Ensembl.
OntologiesGO GO:0090116; P:C-5 methylation of cytosine; IDA:GOC.
OntologiesGO GO:0071230; P:cellular response to amino acid stimulus; IEA:Ensembl.
OntologiesGO GO:0006306; P:DNA methylation; NAS:UniProtKB.
OntologiesGO GO:0043045; P:DNA methylation involved in embryo development; IEA:Ensembl.
OntologiesGO GO:0010424; P:DNA methylation on cytosine within a CG sequence; IEA:Ensembl.
OntologiesGO GO:0006346; P:methylation-dependent chromatin silencing; IEA:Ensembl.
OntologiesGO GO:0051573; P:negative regulation of histone H3-K9 methylation; IMP:UniProtKB.
OntologiesGO GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; IDA:UniProtKB.
OntologiesGO GO:0010628; P:positive regulation of gene expression; IMP:UniProtKB.
OntologiesGO GO:0051571; P:positive regulation of histone H3-K4 methylation; IMP:UniProtKB.
OntologiesGO GO:0045666; P:positive regulation of neuron differentiation; IEA:Ensembl.
OntologiesGO GO:0031503; P:protein complex localization; IEA:Ensembl.
OntologiesGO GO:0006349; P:regulation of gene expression by genetic imprinting; IEA:Ensembl.
OntologiesGO GO:0042493; P:response to drug; IEA:Ensembl.
OntologiesGO GO:0010212; P:response to ionizing radiation; IEA:Ensembl.
OntologiesGO GO:0046498; P:S-adenosylhomocysteine metabolic process; IEA:Ensembl.
OntologiesGO GO:0046499; P:S-adenosylmethioninamine metabolic process; IEA:Ensembl.
Proteomic databasesMaxQB Q9UBC3; -.
Proteomic databasesPaxDb Q9UBC3; -.
Proteomic databasesPRIDE Q9UBC3; -.
Protein family/group databasesREBASE 4120; M.HsaDnmt3B.
Family and domain databasesGene3D 3.40.50.150; -; 1.
Family and domain databasesInterPro IPR025766; ADD.
Family and domain databasesInterPro IPR018117; C5_DNA_meth_AS.
Family and domain databasesInterPro IPR001525; C5_MeTfrase.
Family and domain databasesInterPro IPR025811; C5_MeTrfase_3.
Family and domain databasesInterPro IPR000313; PWWP_dom.
Family and domain databasesInterPro IPR029063; SAM-dependent_MTases-like.
Family and domain databasesInterPro IPR011011; Znf_FYVE_PHD.
Family and domain databasesPfam PF00145; DNA_methylase; 1.
Family and domain databasesPfam PF00855; PWWP; 1.
Family and domain databasesPROSITE PS51533; ADD; 1.
Family and domain databasesPROSITE PS00094; C5_MTASE_1; 1.
Family and domain databasesPROSITE PS50812; PWWP; 1.
Family and domain databasesPROSITE PS51679; SAM_MT_C5; 1.
Family and domain databasesSMART SM00293; PWWP; 1.
Family and domain databasesSUPFAM SSF53335; SSF53335; 1.
Family and domain databasesSUPFAM SSF57903; SSF57903; 1.
PTM databasesPhosphoSite Q9UBC3; -.
Protein-protein interaction databasesBioGrid 108126; 66.
Protein-protein interaction databasesDIP DIP-30000N; -.
Protein-protein interaction databasesIntAct Q9UBC3; 23.
Protein-protein interaction databasesMINT MINT-2820816; -.
Protein-protein interaction databasesSTRING 9606.ENSP00000328547; -.
Enzyme and pathway databasesReactome REACT_200808; PRC2 methylates histones and DNA.
Enzyme and pathway databasesReactome REACT_200856; NoRC negatively regulates rRNA expression.
Enzyme and pathway databasesReactome REACT_267652; DNA methylation.
3D structure databasesPDB 3FLG; X-ray; 1.80 A; A=206-355.
3D structure databasesPDB 3QKJ; X-ray; 2.04 A; A/B/C/D=206-355.
3D structure databasesPDBsum 3FLG; -.
3D structure databasesPDBsum 3QKJ; -.
3D structure databasesProteinModelPortal Q9UBC3; -.
3D structure databasesSMR Q9UBC3; 216-350, 415-852.
Protocols and materials databasesDNASU 1789; -.
Phylogenomic databaseseggNOG NOG70699; -.
Phylogenomic databasesGeneTree ENSGT00390000008341; -.
Phylogenomic databasesHOVERGEN HBG051381; -.
Phylogenomic databasesInParanoid Q9UBC3; -.
Phylogenomic databasesKO K17399; -.
Phylogenomic databasesOMA LEWAHGG; -.
Phylogenomic databasesOrthoDB EOG7MWGW6; -.
Phylogenomic databasesPhylomeDB Q9UBC3; -.
Phylogenomic databasesTreeFam TF329039; -.
Organism-specific databasesCTD 1789; -.
Organism-specific databasesGeneCards GC20P031350; -.
Organism-specific databasesHGNC HGNC:2979; DNMT3B.
Organism-specific databasesHPA HPA001595; -.
Organism-specific databasesMIM 242860; phenotype.
Organism-specific databasesMIM 602900; gene.
Organism-specific databasesneXtProt NX_Q9UBC3; -.
Organism-specific databasesOrphanet 2268; ICF syndrome.
Organism-specific databasesPharmGKB PA27446; -.
ChemistryBindingDB Q9UBC3; -.
ChemistryChEMBL CHEMBL6095; -.
OtherChiTaRS DNMT3B; human.
OtherEvolutionaryTrace Q9UBC3; -.
OtherGeneWiki DNMT3B; -.
OtherGenomeRNAi 1789; -.
OtherNextBio 7289; -.
OtherPRO PR:Q9UBC3; -.



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