Cancer Cell Metabolism Gene Database

  Cancer Cell Metabolism Gene DB

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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory
Cross referenced IDs for 5393
* We obtained these cross-references from Uniprot database. It covers 150 different DBs, 18 categories. http://www.uniprot.org/help/cross_references_section
DB CategoryDB NameDB's ID and Url link
Genome annotation databasesEnsembl ENST00000243498; ENSP00000243498; ENSG00000123737. [Q06265-1]
Genome annotation databasesEnsembl ENST00000379663; ENSP00000368984; ENSG00000123737. [Q06265-2]
Genome annotation databasesGeneID 5393; -.
Genome annotation databasesKEGG hsa:5393; -.
Genome annotation databasesUCSC uc003idz.3; human. [Q06265-2]
Genome annotation databasesUCSC uc003iea.3; human. [Q06265-1]
Sequence databasesCCDS CCDS34057.1; -. [Q06265-2]
Sequence databasesCCDS CCDS3722.2; -. [Q06265-1]
Sequence databasesEMBL M58460; AAA58384.1; -; mRNA.
Sequence databasesEMBL U09215; AAA18832.1; -; mRNA.
Sequence databasesEMBL AJ505989; CAD44530.1; -; mRNA.
Sequence databasesEMBL AJ517294; CAD56889.1; -; mRNA.
Sequence databasesEMBL AC079341; AAY40968.1; -; Genomic_DNA.
Sequence databasesPIR G01425; G01425.
Sequence databasesRefSeq NP_001029366.1; NM_001034194.1. [Q06265-2]
Sequence databasesRefSeq NP_005024.2; NM_005033.2. [Q06265-1]
Sequence databasesUniGene Hs.91728; -.
Polymorphism databasesDMDM 147744559; -.
Gene expression databasesBgee Q06265; -.
Gene expression databasesCleanEx HS_EXOSC9; -.
Gene expression databasesExpressionAtlas Q06265; baseline and differential.
Gene expression databasesGenevestigator Q06265; -.
OntologiesGO GO:0005737; C:cytoplasm; IDA:UniProtKB.
OntologiesGO GO:0005829; C:cytosol; TAS:Reactome.
OntologiesGO GO:0000178; C:exosome (RNase complex); IDA:UniProtKB.
OntologiesGO GO:0045111; C:intermediate filament cytoskeleton; IDA:HPA.
OntologiesGO GO:0000176; C:nuclear exosome (RNase complex); IDA:UniProtKB.
OntologiesGO GO:0005730; C:nucleolus; IDA:HPA.
OntologiesGO GO:0005634; C:nucleus; IDA:UniProtKB.
OntologiesGO GO:0000175; F:3'-5'-exoribonuclease activity; NAS:UniProtKB.
OntologiesGO GO:0017091; F:AU-rich element binding; IDA:UniProtKB.
OntologiesGO GO:0044822; F:poly(A) RNA binding; IDA:UniProtKB.
OntologiesGO GO:0003723; F:RNA binding; NAS:UniProtKB.
OntologiesGO GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; IMP:UniProtKB.
OntologiesGO GO:0010467; P:gene expression; TAS:Reactome.
OntologiesGO GO:0006955; P:immune response; NAS:UniProtKB.
OntologiesGO GO:0016071; P:mRNA metabolic process; TAS:Reactome.
OntologiesGO GO:0071028; P:nuclear mRNA surveillance; IMP:UniProtKB.
OntologiesGO GO:0071035; P:nuclear polyadenylation-dependent rRNA catabolic process; IMP:UniProtKB.
OntologiesGO GO:0000956; P:nuclear-transcribed mRNA catabolic process; IMP:UniProtKB.
OntologiesGO GO:0000288; P:nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay; TAS:Reactome.
OntologiesGO GO:0030307; P:positive regulation of cell growth; IMP:UniProtKB.
OntologiesGO GO:0016070; P:RNA metabolic process; TAS:Reactome.
OntologiesGO GO:0090503; P:RNA phosphodiester bond hydrolysis, exonucleolytic; NAS:GOC.
OntologiesGO GO:0006364; P:rRNA processing; NAS:UniProtKB.
Proteomic databasesMaxQB Q06265; -.
Proteomic databasesPaxDb Q06265; -.
Proteomic databasesPRIDE Q06265; -.
Family and domain databasesInterPro IPR001247; ExoRNase_PH_dom1.
Family and domain databasesInterPro IPR015847; ExoRNase_PH_dom2.
Family and domain databasesInterPro IPR020568; Ribosomal_S5_D2-typ_fold.
Family and domain databasesPfam PF01138; RNase_PH; 1.
Family and domain databasesPfam PF03725; RNase_PH_C; 1.
Family and domain databasesSUPFAM SSF54211; SSF54211; 2.
Family and domain databasesSUPFAM SSF55666; SSF55666; 1.
PTM databasesPhosphoSite Q06265; -.
Protein-protein interaction databasesBioGrid 111402; 19.
Protein-protein interaction databasesDIP DIP-31286N; -.
Protein-protein interaction databasesIntAct Q06265; 15.
Protein-protein interaction databasesMINT MINT-1036055; -.
Protein-protein interaction databasesSTRING 9606.ENSP00000368984; -.
Enzyme and pathway databasesReactome REACT_18355; ATF4 activates genes.
Enzyme and pathway databasesReactome REACT_20619; mRNA decay by 3' to 5' exoribonuclease.
Enzyme and pathway databasesReactome REACT_24915; Butyrate Response Factor 1 (BRF1) destabilizes mRNA.
Enzyme and pathway databasesReactome REACT_25042; KSRP destabilizes mRNA.
Enzyme and pathway databasesReactome REACT_25064; Tristetraprolin (TTP) destabilizes mRNA.
3D structure databasesPDB 2NN6; X-ray; 3.35 A; A=1-302.
3D structure databasesPDBsum 2NN6; -.
3D structure databasesProteinModelPortal Q06265; -.
3D structure databasesSMR Q06265; 2-278.
Phylogenomic databaseseggNOG COG2123; -.
Phylogenomic databasesGeneTree ENSGT00530000063093; -.
Phylogenomic databasesHOGENOM HOG000229504; -.
Phylogenomic databasesHOVERGEN HBG051523; -.
Phylogenomic databasesInParanoid Q06265; -.
Phylogenomic databasesKO K03678; -.
Phylogenomic databasesOMA KMDTGVE; -.
Phylogenomic databasesOrthoDB EOG7X9G70; -.
Phylogenomic databasesPhylomeDB Q06265; -.
Phylogenomic databasesTreeFam TF300092; -.
Organism-specific databasesCTD 5393; -.
Organism-specific databasesGeneCards GC04P122722; -.
Organism-specific databasesHGNC HGNC:9137; EXOSC9.
Organism-specific databasesHPA HPA041838; -.
Organism-specific databasesHPA HPA048257; -.
Organism-specific databasesMIM 606180; gene.
Organism-specific databasesneXtProt NX_Q06265; -.
Organism-specific databasesPharmGKB PA33463; -.
OtherEvolutionaryTrace Q06265; -.
OtherGeneWiki Exosome_component_9; -.
OtherGenomeRNAi 5393; -.
OtherNextBio 20906; -.
OtherPRO PR:Q06265; -.



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