Cancer Cell Metabolism Gene Database

  Cancer Cell Metabolism Gene DB

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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory
Cross referenced IDs for 4060
* We obtained these cross-references from Uniprot database. It covers 150 different DBs, 18 categories. http://www.uniprot.org/help/cross_references_section
DB CategoryDB NameDB's ID and Url link
Genome annotation databasesEnsembl ENST00000266718; ENSP00000266718; ENSG00000139329.
Genome annotation databasesGeneID 4060; -.
Genome annotation databasesKEGG hsa:4060; -.
Genome annotation databasesUCSC uc001tbm.3; human.
Sequence databasesCCDS CCDS9038.1; -.
Sequence databasesEMBL U18728; AAA85268.1; -; mRNA.
Sequence databasesEMBL U21128; AAA91639.1; -; mRNA.
Sequence databasesEMBL BT006707; AAP35353.1; -; mRNA.
Sequence databasesEMBL AK312682; BAG35562.1; -; mRNA.
Sequence databasesEMBL CH471054; EAW97449.1; -; Genomic_DNA.
Sequence databasesEMBL BC007038; AAH07038.1; -; mRNA.
Sequence databasesEMBL BC035997; AAH35997.1; -; mRNA.
Sequence databasesRefSeq NP_002336.1; NM_002345.3.
Sequence databasesUniGene Hs.406475; -.
Polymorphism databasesDMDM 20141464; -.
Gene expression databasesBgee P51884; -.
Gene expression databasesCleanEx HS_LUM; -.
Gene expression databasesGenevestigator P51884; -.
OntologiesGO GO:0005576; C:extracellular region; NAS:UniProtKB.
OntologiesGO GO:0005615; C:extracellular space; IDA:BHF-UCL.
OntologiesGO GO:0070062; C:extracellular vesicular exosome; IDA:UniProtKB.
OntologiesGO GO:0005583; C:fibrillar collagen trimer; IDA:UniProtKB.
OntologiesGO GO:0005796; C:Golgi lumen; TAS:Reactome.
OntologiesGO GO:0043202; C:lysosomal lumen; TAS:Reactome.
OntologiesGO GO:0005578; C:proteinaceous extracellular matrix; TAS:ProtInc.
OntologiesGO GO:0005518; F:collagen binding; IDA:UniProtKB.
OntologiesGO GO:0005201; F:extracellular matrix structural constituent; NAS:UniProtKB.
OntologiesGO GO:0005975; P:carbohydrate metabolic process; TAS:Reactome.
OntologiesGO GO:0051216; P:cartilage development; IEA:Ensembl.
OntologiesGO GO:0030199; P:collagen fibril organization; NAS:UniProtKB.
OntologiesGO GO:0030198; P:extracellular matrix organization; TAS:Reactome.
OntologiesGO GO:0030203; P:glycosaminoglycan metabolic process; TAS:Reactome.
OntologiesGO GO:0018146; P:keratan sulfate biosynthetic process; TAS:Reactome.
OntologiesGO GO:0042340; P:keratan sulfate catabolic process; TAS:Reactome.
OntologiesGO GO:0042339; P:keratan sulfate metabolic process; TAS:Reactome.
OntologiesGO GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IEA:Ensembl.
OntologiesGO GO:0070848; P:response to growth factor; IEA:Ensembl.
OntologiesGO GO:0014070; P:response to organic cyclic compound; IEA:Ensembl.
OntologiesGO GO:0044281; P:small molecule metabolic process; TAS:Reactome.
OntologiesGO GO:0007601; P:visual perception; TAS:ProtInc.
Proteomic databasesMaxQB P51884; -.
Proteomic databasesPaxDb P51884; -.
Proteomic databasesPeptideAtlas P51884; -.
Proteomic databasesPRIDE P51884; -.
Family and domain databasesInterPro IPR001611; Leu-rich_rpt.
Family and domain databasesInterPro IPR003591; Leu-rich_rpt_typical-subtyp.
Family and domain databasesInterPro IPR000372; LRR-contain_N.
Family and domain databasesInterPro IPR027219; Lumican.
Family and domain databasesPANTHER PTHR24371:SF54; PTHR24371:SF54; 1.
Family and domain databasesPfam PF13855; LRR_8; 3.
Family and domain databasesPfam PF01462; LRRNT; 1.
Family and domain databasesPROSITE PS51450; LRR; 10.
Family and domain databasesSMART SM00369; LRR_TYP; 1.
Family and domain databasesSMART SM00013; LRRNT; 1.
PTM databasesPhosphoSite P51884; -.
Protein-protein interaction databasesBioGrid 110238; 4.
Protein-protein interaction databasesIntAct P51884; 2.
Protein-protein interaction databasesMINT MINT-1422554; -.
Protein-protein interaction databasesSTRING 9606.ENSP00000266718; -.
Enzyme and pathway databasesReactome REACT_121120; Keratan sulfate biosynthesis.
Enzyme and pathway databasesReactome REACT_121313; Keratan sulfate degradation.
Enzyme and pathway databasesReactome REACT_13552; Integrin cell surface interactions.
Enzyme and pathway databasesReactome REACT_163906; ECM proteoglycans.
Enzyme and pathway databasesReactome REACT_267635; Defective B4GALT1 causes B4GALT1-CDG (CDG-2d).
Enzyme and pathway databasesReactome REACT_267713; Defective CHST6 causes MCDC1.
3D structure databasesProteinModelPortal P51884; -.
3D structure databasesSMR P51884; 37-329.
Protocols and materials databasesDNASU 4060; -.
Phylogenomic databaseseggNOG COG4886; -.
Phylogenomic databasesGeneTree ENSGT00760000118969; -.
Phylogenomic databasesHOGENOM HOG000234447; -.
Phylogenomic databasesHOVERGEN HBG108061; -.
Phylogenomic databasesInParanoid P51884; -.
Phylogenomic databasesKO K08122; -.
Phylogenomic databasesOMA KKLHINY; -.
Phylogenomic databasesOrthoDB EOG75F4DF; -.
Phylogenomic databasesPhylomeDB P51884; -.
Phylogenomic databasesTreeFam TF334562; -.
Organism-specific databasesCTD 4060; -.
Organism-specific databasesGeneCards GC12M091430; -.
Organism-specific databasesHGNC HGNC:6724; LUM.
Organism-specific databasesHPA CAB022193; -.
Organism-specific databasesHPA HPA001522; -.
Organism-specific databasesMIM 600616; gene.
Organism-specific databasesneXtProt NX_P51884; -.
Organism-specific databasesPharmGKB PA30486; -.
OtherChiTaRS LUM; human.
OtherGeneWiki LUM; -.
OtherGenomeRNAi 4060; -.
OtherNextBio 15912; -.
OtherPMAP-CutDB P51884; -.
OtherPRO PR:P51884; -.



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