Cancer Cell Metabolism Gene Database

  Cancer Cell Metabolism Gene DB

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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory
Cross referenced IDs for 26986
* We obtained these cross-references from Uniprot database. It covers 150 different DBs, 18 categories. http://www.uniprot.org/help/cross_references_section
DB CategoryDB NameDB's ID and Url link
Genome annotation databasesEnsembl ENST00000318607; ENSP00000313007; ENSG00000070756. [P11940-1]
Genome annotation databasesGeneID 26986; -.
Genome annotation databasesKEGG hsa:26986; -.
Genome annotation databasesUCSC uc003yjs.1; human. [P11940-1]
Sequence databasesCCDS CCDS6289.1; -. [P11940-1]
Sequence databasesEMBL Y00345; CAA68428.1; -; mRNA.
Sequence databasesEMBL U68104; AAD08718.1; -; Genomic_DNA.
Sequence databasesEMBL U68093; AAD08718.1; JOINED; Genomic_DNA.
Sequence databasesEMBL U68094; AAD08718.1; JOINED; Genomic_DNA.
Sequence databasesEMBL U68095; AAD08718.1; JOINED; Genomic_DNA.
Sequence databasesEMBL U68097; AAD08718.1; JOINED; Genomic_DNA.
Sequence databasesEMBL U68098; AAD08718.1; JOINED; Genomic_DNA.
Sequence databasesEMBL U68099; AAD08718.1; JOINED; Genomic_DNA.
Sequence databasesEMBL U68100; AAD08718.1; JOINED; Genomic_DNA.
Sequence databasesEMBL U68101; AAD08718.1; JOINED; Genomic_DNA.
Sequence databasesEMBL U68102; AAD08718.1; JOINED; Genomic_DNA.
Sequence databasesEMBL U68103; AAD08718.1; JOINED; Genomic_DNA.
Sequence databasesEMBL AP001205; -; NOT_ANNOTATED_CDS; Genomic_DNA.
Sequence databasesEMBL BC015958; AAH15958.1; -; mRNA.
Sequence databasesEMBL BC023520; AAH23520.1; -; mRNA.
Sequence databasesEMBL Z48501; CAA88401.1; -; mRNA.
Sequence databasesPIR A93668; DNHUPA.
Sequence databasesPIR S52491; S52491.
Sequence databasesRefSeq NP_002559.2; NM_002568.3. [P11940-1]
Sequence databasesRefSeq XP_005250918.1; XM_005250861.1. [P11940-1]
Sequence databasesUniGene Hs.387804; -.
Polymorphism databasesDMDM 3183544; -.
Gene expression databasesBgee P11940; -.
Gene expression databasesCleanEx HS_PABPC1; -.
Gene expression databasesExpressionAtlas P11940; baseline and differential.
Gene expression databasesGenevestigator P11940; -.
OntologiesGO GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.
OntologiesGO GO:0005737; C:cytoplasm; TAS:UniProtKB.
OntologiesGO GO:0036464; C:cytoplasmic ribonucleoprotein granule; IDA:ParkinsonsUK-UCL.
OntologiesGO GO:0010494; C:cytoplasmic stress granule; IDA:UniProtKB.
OntologiesGO GO:0005829; C:cytosol; TAS:Reactome.
OntologiesGO GO:0070062; C:extracellular vesicular exosome; IDA:UniProtKB.
OntologiesGO GO:0005925; C:focal adhesion; IDA:UniProtKB.
OntologiesGO GO:0016020; C:membrane; IDA:UniProtKB.
OntologiesGO GO:0005634; C:nucleus; IDA:MGI.
OntologiesGO GO:0030529; C:ribonucleoprotein complex; IDA:UniProtKB.
OntologiesGO GO:0000166; F:nucleotide binding; IEA:InterPro.
OntologiesGO GO:0008143; F:poly(A) binding; TAS:UniProtKB.
OntologiesGO GO:0044822; F:poly(A) RNA binding; IDA:UniProtKB.
OntologiesGO GO:0008266; F:poly(U) RNA binding; IDA:MGI.
OntologiesGO GO:0008022; F:protein C-terminus binding; IPI:UniProtKB.
OntologiesGO GO:0008494; F:translation activator activity; TAS:UniProtKB.
OntologiesGO GO:0044267; P:cellular protein metabolic process; TAS:Reactome.
OntologiesGO GO:0010467; P:gene expression; TAS:Reactome.
OntologiesGO GO:0031047; P:gene silencing by RNA; ISS:UniProtKB.
OntologiesGO GO:0016071; P:mRNA metabolic process; TAS:Reactome.
OntologiesGO GO:0006378; P:mRNA polyadenylation; TAS:UniProtKB.
OntologiesGO GO:0000398; P:mRNA splicing, via spliceosome; IC:UniProtKB.
OntologiesGO GO:0048255; P:mRNA stabilization; TAS:UniProtKB.
OntologiesGO GO:2000623; P:negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IDA:UniProtKB.
OntologiesGO GO:0000288; P:nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay; TAS:Reactome.
OntologiesGO GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; TAS:Reactome.
OntologiesGO GO:0000289; P:nuclear-transcribed mRNA poly(A) tail shortening; TAS:Reactome.
OntologiesGO GO:1900153; P:positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay; ISS:UniProtKB.
OntologiesGO GO:0060213; P:positive regulation of nuclear-transcribed mRNA poly(A) tail shortening; ISS:UniProtKB.
OntologiesGO GO:0045727; P:positive regulation of translation; TAS:GOC.
OntologiesGO GO:0016070; P:RNA metabolic process; TAS:Reactome.
OntologiesGO GO:0006412; P:translation; TAS:Reactome.
OntologiesGO GO:0006413; P:translational initiation; TAS:Reactome.
Proteomic databasesMaxQB P11940; -.
Proteomic databasesPaxDb P11940; -.
Proteomic databasesPRIDE P11940; -.
Family and domain databasesGene3D 1.10.1900.10; -; 1.
Family and domain databasesGene3D 3.30.70.330; -; 4.
Family and domain databasesInterPro IPR012677; Nucleotide-bd_a/b_plait.
Family and domain databasesInterPro IPR006515; PABP_1234.
Family and domain databasesInterPro IPR002004; PABP_HYD.
Family and domain databasesInterPro IPR000504; RRM_dom.
Family and domain databasesPfam PF00658; PABP; 1.
Family and domain databasesPfam PF00076; RRM_1; 4.
Family and domain databasesPROSITE PS51309; PABC; 1.
Family and domain databasesPROSITE PS50102; RRM; 4.
Family and domain databasesSMART SM00517; PolyA; 1.
Family and domain databasesSMART SM00360; RRM; 4.
Family and domain databasesSUPFAM SSF63570; SSF63570; 1.
Family and domain databasesTIGRFAMs TIGR01628; PABP-1234; 1.
PTM databasesPhosphoSite P11940; -.
Protein-protein interaction databasesBioGrid 117939; 160.
Protein-protein interaction databasesDIP DIP-31613N; -.
Protein-protein interaction databasesIntAct P11940; 86.
Protein-protein interaction databasesMINT MINT-96210; -.
Protein-protein interaction databasesSTRING 9606.ENSP00000313007; -.
Enzyme and pathway databasesReactome REACT_1979; Translation initiation complex formation.
Enzyme and pathway databasesReactome REACT_20514; Deadenylation of mRNA.
Enzyme and pathway databasesReactome REACT_25325; AUF1 (hnRNP D0) destabilizes mRNA.
Enzyme and pathway databasesReactome REACT_75768; Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
Enzyme and pathway databasesReactome REACT_75822; Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
Enzyme and pathway databasesReactome REACT_79; L13a-mediated translational silencing of Ceruloplasmin expression.
3D structure databasesPDB 1CVJ; X-ray; 2.60 A; A/B/C/D/E/F/G/H=1-190.
3D structure databasesPDB 1G9L; NMR; -; A=498-636.
3D structure databasesPDB 1JGN; NMR; -; A=544-636.
3D structure databasesPDB 1JH4; NMR; -; A=544-636.
3D structure databasesPDB 2K8G; NMR; -; A=90-182.
3D structure databasesPDB 2RQG; NMR; -; B=541-623.
3D structure databasesPDB 2RQH; NMR; -; B=541-623.
3D structure databasesPDB 2X04; X-ray; 1.49 A; A/B=545-619.
3D structure databasesPDB 3KTP; X-ray; 1.50 A; A=544-626.
3D structure databasesPDB 3KTR; X-ray; 1.70 A; A=544-626.
3D structure databasesPDB 3KUI; X-ray; 2.30 A; A=544-626.
3D structure databasesPDB 3KUJ; X-ray; 1.40 A; A=544-626.
3D structure databasesPDB 3KUR; X-ray; 2.50 A; A/B/C/D/E/F/G/H=544-617.
3D structure databasesPDB 3KUS; X-ray; 1.40 A; A/B=544-626.
3D structure databasesPDB 3KUT; X-ray; 1.50 A; A/B=544-626.
3D structure databasesPDB 3PKN; X-ray; 1.80 A; A=544-626.
3D structure databasesPDB 3PTH; X-ray; 1.70 A; A=543-621.
3D structure databasesPDB 4F02; X-ray; 2.00 A; A/D=1-190.
3D structure databasesPDB 4F25; X-ray; 1.90 A; A=99-199.
3D structure databasesPDB 4F26; X-ray; 2.00 A; A=99-199.
3D structure databasesPDBsum 1CVJ; -.
3D structure databasesPDBsum 1G9L; -.
3D structure databasesPDBsum 1JGN; -.
3D structure databasesPDBsum 1JH4; -.
3D structure databasesPDBsum 2K8G; -.
3D structure databasesPDBsum 2RQG; -.
3D structure databasesPDBsum 2RQH; -.
3D structure databasesPDBsum 2X04; -.
3D structure databasesPDBsum 3KTP; -.
3D structure databasesPDBsum 3KTR; -.
3D structure databasesPDBsum 3KUI; -.
3D structure databasesPDBsum 3KUJ; -.
3D structure databasesPDBsum 3KUR; -.
3D structure databasesPDBsum 3KUS; -.
3D structure databasesPDBsum 3KUT; -.
3D structure databasesPDBsum 3PKN; -.
3D structure databasesPDBsum 3PTH; -.
3D structure databasesPDBsum 4F02; -.
3D structure databasesPDBsum 4F25; -.
3D structure databasesPDBsum 4F26; -.
3D structure databasesProteinModelPortal P11940; -.
3D structure databasesSMR P11940; 10-435, 494-636.
Protocols and materials databasesDNASU 26986; -.
Phylogenomic databaseseggNOG COG0724; -.
Phylogenomic databasesGeneTree ENSGT00760000118913; -.
Phylogenomic databasesHOGENOM HOG000217922; -.
Phylogenomic databasesHOVERGEN HBG002295; -.
Phylogenomic databasesInParanoid P11940; -.
Phylogenomic databasesKO K13126; -.
Phylogenomic databasesOMA XAVDEMN; -.
Phylogenomic databasesOrthoDB EOG7RV9FP; -.
Phylogenomic databasesPhylomeDB P11940; -.
Phylogenomic databasesTreeFam TF300458; -.
Organism-specific databasesCTD 26986; -.
Organism-specific databasesGeneCards GC08M101715; -.
Organism-specific databasesHGNC HGNC:8554; PABPC1.
Organism-specific databasesHPA CAB011536; -.
Organism-specific databasesHPA HPA045423; -.
Organism-specific databasesMIM 604679; gene.
Organism-specific databasesneXtProt NX_P11940; -.
Organism-specific databasesPharmGKB PA32880; -.
ChemistryBindingDB P11940; -.
ChemistryChEMBL CHEMBL1293286; -.
OtherChiTaRS PABPC1; human.
OtherEvolutionaryTrace P11940; -.
OtherGeneWiki PABPC1; -.
OtherGenomeRNAi 26986; -.
OtherNextBio 49454; -.
OtherPMAP-CutDB P11940; -.
OtherPRO PR:P11940; -.



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