Cancer Cell Metabolism Gene Database

  Cancer Cell Metabolism Gene DB

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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory
Cross referenced IDs for 5073
* We obtained these cross-references from Uniprot database. It covers 150 different DBs, 18 categories. http://www.uniprot.org/help/cross_references_section
DB CategoryDB NameDB's ID and Url link
Genome annotation databasesEnsembl ENST00000341484; ENSP00000345456; ENSG00000140694. [O95453-2]
Genome annotation databasesEnsembl ENST00000420015; ENSP00000410525; ENSG00000140694. [O95453-3]
Genome annotation databasesEnsembl ENST00000437198; ENSP00000387911; ENSG00000140694. [O95453-1]
Genome annotation databasesEnsembl ENST00000615183; ENSP00000478668; ENSG00000274829. [O95453-1]
Genome annotation databasesEnsembl ENST00000618929; ENSP00000484279; ENSG00000274829. [O95453-3]
Genome annotation databasesGeneID 5073; -.
Genome annotation databasesKEGG hsa:5073; -.
Genome annotation databasesUCSC uc010uzc.2; human. [O95453-1]
Genome annotation databasesUCSC uc010uze.2; human. [O95453-3]
Sequence databasesCCDS CCDS45419.1; -. [O95453-1]
Sequence databasesCCDS CCDS45420.1; -. [O95453-2]
Sequence databasesCCDS CCDS58425.1; -. [O95453-3]
Sequence databasesEMBL AJ005698; CAA06683.1; -; mRNA.
Sequence databasesEMBL AK293189; BAG56729.1; -; mRNA.
Sequence databasesEMBL AK301648; BAG63126.1; -; mRNA.
Sequence databasesEMBL AK315020; BAG37510.1; -; mRNA.
Sequence databasesEMBL AC009167; -; NOT_ANNOTATED_CDS; Genomic_DNA.
Sequence databasesEMBL AC092291; -; NOT_ANNOTATED_CDS; Genomic_DNA.
Sequence databasesEMBL CH471112; EAW85110.1; -; Genomic_DNA.
Sequence databasesEMBL BC050029; AAH50029.1; -; mRNA.
Sequence databasesRefSeq NP_001127949.1; NM_001134477.2. [O95453-2]
Sequence databasesRefSeq NP_001229921.1; NM_001242992.1. [O95453-3]
Sequence databasesRefSeq NP_002573.1; NM_002582.3. [O95453-1]
Sequence databasesUniGene Hs.253197; -.
Gene expression databasesBgee O95453; -.
Gene expression databasesCleanEx HS_PARN; -.
Gene expression databasesExpressionAtlas O95453; baseline and differential.
Gene expression databasesGenevestigator O95453; -.
OntologiesGO GO:0005737; C:cytoplasm; TAS:ProtInc.
OntologiesGO GO:0005829; C:cytosol; TAS:Reactome.
OntologiesGO GO:0005634; C:nucleus; TAS:ProtInc.
OntologiesGO GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
OntologiesGO GO:0003730; F:mRNA 3'-UTR binding; TAS:ProtInc.
OntologiesGO GO:0004518; F:nuclease activity; TAS:ProtInc.
OntologiesGO GO:0000166; F:nucleotide binding; IEA:InterPro.
OntologiesGO GO:0044822; F:poly(A) RNA binding; IDA:UniProtKB.
OntologiesGO GO:0004535; F:poly(A)-specific ribonuclease activity; TAS:Reactome.
OntologiesGO GO:0019901; F:protein kinase binding; IPI:UniProtKB.
OntologiesGO GO:0007292; P:female gamete generation; TAS:ProtInc.
OntologiesGO GO:0010467; P:gene expression; TAS:Reactome.
OntologiesGO GO:0016071; P:mRNA metabolic process; TAS:Reactome.
OntologiesGO GO:0000288; P:nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay; TAS:Reactome.
OntologiesGO GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IMP:UniProtKB.
OntologiesGO GO:0000289; P:nuclear-transcribed mRNA poly(A) tail shortening; TAS:Reactome.
OntologiesGO GO:0090305; P:nucleic acid phosphodiester bond hydrolysis; TAS:GOC.
OntologiesGO GO:0016070; P:RNA metabolic process; TAS:Reactome.
OntologiesGO GO:0009451; P:RNA modification; TAS:ProtInc.
OntologiesGO GO:0090503; P:RNA phosphodiester bond hydrolysis, exonucleolytic; TAS:GOC.
Proteomic databasesMaxQB O95453; -.
Proteomic databasesPaxDb O95453; -.
Proteomic databasesPRIDE O95453; -.
Family and domain databasesGene3D 3.30.1370.50; -; 1.
Family and domain databasesGene3D 3.30.420.10; -; 2.
Family and domain databasesGene3D 3.30.70.330; -; 1.
Family and domain databasesInterPro IPR012677; Nucleotide-bd_a/b_plait.
Family and domain databasesInterPro IPR014789; PolyA-riboNase_RNA_binding.
Family and domain databasesInterPro IPR001374; R3H_ss-bd.
Family and domain databasesInterPro IPR006941; RNase_CAF1.
Family and domain databasesInterPro IPR012337; RNaseH-like_dom.
Family and domain databasesPfam PF04857; CAF1; 1.
Family and domain databasesPfam PF08675; RNA_bind; 1.
Family and domain databasesPROSITE PS51061; R3H; 1.
Family and domain databasesSUPFAM SSF53098; SSF53098; 2.
Family and domain databasesSUPFAM SSF82708; SSF82708; 1.
PTM databasesPhosphoSite O95453; -.
Protein-protein interaction databasesBioGrid 111107; 20.
Protein-protein interaction databasesDIP DIP-31124N; -.
Protein-protein interaction databasesIntAct O95453; 6.
Protein-protein interaction databasesMINT MINT-3002980; -.
Protein-protein interaction databasesSTRING 9606.ENSP00000387911; -.
Enzyme and pathway databasesBRENDA 3.1.13.4; 2681.
Enzyme and pathway databasesReactome REACT_18355; ATF4 activates genes.
Enzyme and pathway databasesReactome REACT_20514; Deadenylation of mRNA.
Enzyme and pathway databasesReactome REACT_25042; KSRP destabilizes mRNA.
2D gel databasesSWISS-2DPAGE O95453; -.
3D structure databasesPDB 2A1R; X-ray; 2.60 A; A/B=1-430.
3D structure databasesPDB 2A1S; X-ray; 2.60 A; A/B/C/D=1-430.
3D structure databasesPDB 3CTR; X-ray; 2.10 A; A=445-540.
3D structure databasesPDBsum 2A1R; -.
3D structure databasesPDBsum 2A1S; -.
3D structure databasesPDBsum 3CTR; -.
3D structure databasesProteinModelPortal O95453; -.
3D structure databasesSMR O95453; 1-514.
Protocols and materials databasesDNASU 2987; -.
Protocols and materials databasesDNASU 5073; -.
Phylogenomic databaseseggNOG NOG145331; -.
Phylogenomic databasesGeneTree ENSGT00530000063673; -.
Phylogenomic databasesHOGENOM HOG000007285; -.
Phylogenomic databasesHOVERGEN HBG053512; -.
Phylogenomic databasesInParanoid O95453; -.
Phylogenomic databasesKO K01148; -.
Phylogenomic databasesOMA LEQTDSC; -.
Phylogenomic databasesOrthoDB EOG7GN2MD; -.
Phylogenomic databasesPhylomeDB O95453; -.
Phylogenomic databasesTreeFam TF314502; -.
Organism-specific databasesCTD 5073; -.
Organism-specific databasesGeneCards GC16M014529; -.
Organism-specific databasesHGNC HGNC:8609; PARN.
Organism-specific databasesHPA CAB011673; -.
Organism-specific databasesHPA HPA006314; -.
Organism-specific databasesHPA HPA012010; -.
Organism-specific databasesMIM 604212; gene.
Organism-specific databasesneXtProt NX_O95453; -.
Organism-specific databasesPharmGKB PA29072; -.
Organism-specific databasesPharmGKB PA32949; -.
ChemistryBindingDB O95453; -.
OtherChiTaRS PARN; human.
OtherEvolutionaryTrace O95453; -.
OtherGeneWiki PARN; -.
OtherGeneWiki Poly(A)-specific_ribonuclease; -.
OtherGenomeRNAi 5073; -.
OtherNextBio 11844; -.
OtherPRO PR:O95453; -.



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