Cancer Cell Metabolism Gene Database

  Cancer Cell Metabolism Gene DB

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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory
Cross referenced IDs for 26227
* We obtained these cross-references from Uniprot database. It covers 150 different DBs, 18 categories. http://www.uniprot.org/help/cross_references_section
DB CategoryDB NameDB's ID and Url link
Genome annotation databasesEnsembl ENST00000369409; ENSP00000358417; ENSG00000092621.
Genome annotation databasesGeneID 26227; -.
Genome annotation databasesKEGG hsa:26227; -.
Genome annotation databasesUCSC uc001ehz.3; human.
Sequence databasesCCDS CCDS904.1; -.
Sequence databasesEMBL AF006043; AAB88664.1; -; mRNA.
Sequence databasesEMBL AF171237; AAD51415.1; -; mRNA.
Sequence databasesEMBL CR456795; CAG33076.1; -; mRNA.
Sequence databasesEMBL AK315360; BAG37755.1; -; mRNA.
Sequence databasesEMBL AL589734; CAI22407.1; -; Genomic_DNA.
Sequence databasesEMBL AL139251; CAI22407.1; JOINED; Genomic_DNA.
Sequence databasesEMBL AL139251; CAI22212.1; -; Genomic_DNA.
Sequence databasesEMBL AL589734; CAI22212.1; JOINED; Genomic_DNA.
Sequence databasesEMBL CH471122; EAW56708.1; -; Genomic_DNA.
Sequence databasesEMBL BC000303; AAH00303.1; -; mRNA.
Sequence databasesEMBL BC001349; AAH01349.1; -; mRNA.
Sequence databasesEMBL BC011262; AAH11262.1; -; mRNA.
Sequence databasesRefSeq NP_006614.2; NM_006623.3.
Sequence databasesUniGene Hs.487296; -.
Gene expression databasesBgee O43175; -.
Gene expression databasesCleanEx HS_PHGDH; -.
Gene expression databasesExpressionAtlas O43175; baseline and differential.
Gene expression databasesGenevestigator O43175; -.
OntologiesGO GO:0005829; C:cytosol; TAS:Reactome.
OntologiesGO GO:0070062; C:extracellular vesicular exosome; IDA:UniProtKB.
OntologiesGO GO:0009055; F:electron carrier activity; TAS:UniProtKB.
OntologiesGO GO:0051287; F:NAD binding; IEA:InterPro.
OntologiesGO GO:0004617; F:phosphoglycerate dehydrogenase activity; TAS:Reactome.
OntologiesGO GO:0007420; P:brain development; TAS:ProtInc.
OntologiesGO GO:0008652; P:cellular amino acid biosynthetic process; TAS:Reactome.
OntologiesGO GO:0034641; P:cellular nitrogen compound metabolic process; TAS:Reactome.
OntologiesGO GO:0070314; P:G1 to G0 transition; IEA:Ensembl.
OntologiesGO GO:0009448; P:gamma-aminobutyric acid metabolic process; IEA:Ensembl.
OntologiesGO GO:0021782; P:glial cell development; IEA:Ensembl.
OntologiesGO GO:0006541; P:glutamine metabolic process; IEA:Ensembl.
OntologiesGO GO:0006544; P:glycine metabolic process; IEA:Ensembl.
OntologiesGO GO:0006564; P:L-serine biosynthetic process; TAS:Reactome.
OntologiesGO GO:0021915; P:neural tube development; IEA:Ensembl.
OntologiesGO GO:0031175; P:neuron projection development; IEA:Ensembl.
OntologiesGO GO:0010468; P:regulation of gene expression; IEA:Ensembl.
OntologiesGO GO:0044281; P:small molecule metabolic process; TAS:Reactome.
OntologiesGO GO:0021510; P:spinal cord development; IEA:Ensembl.
OntologiesGO GO:0019530; P:taurine metabolic process; IEA:Ensembl.
OntologiesGO GO:0006566; P:threonine metabolic process; IEA:Ensembl.
Proteomic databasesMaxQB O43175; -.
Proteomic databasesPaxDb O43175; -.
Proteomic databasesPeptideAtlas O43175; -.
Proteomic databasesPRIDE O43175; -.
Family and domain databasesGene3D 3.30.1330.90; -; 1.
Family and domain databasesGene3D 3.40.50.720; -; 2.
Family and domain databasesInterPro IPR029009; ASB_dom.
Family and domain databasesInterPro IPR006139; D-isomer_2_OHA_DH_cat_dom.
Family and domain databasesInterPro IPR029753; D-isomer_DH_CS.
Family and domain databasesInterPro IPR029752; D-isomer_DH_CS1.
Family and domain databasesInterPro IPR006140; D-isomer_DH_NAD-bd.
Family and domain databasesInterPro IPR016040; NAD(P)-bd_dom.
Family and domain databasesInterPro IPR006236; PGDH.
Family and domain databasesPfam PF00389; 2-Hacid_dh; 1.
Family and domain databasesPfam PF02826; 2-Hacid_dh_C; 1.
Family and domain databasesPROSITE PS00065; D_2_HYDROXYACID_DH_1; 1.
Family and domain databasesPROSITE PS00670; D_2_HYDROXYACID_DH_2; 1.
Family and domain databasesPROSITE PS00671; D_2_HYDROXYACID_DH_3; 1.
Family and domain databasesSUPFAM SSF143548; SSF143548; 1.
Family and domain databasesTIGRFAMs TIGR01327; PGDH; 1.
PTM databasesPhosphoSite O43175; -.
Protein-protein interaction databasesBioGrid 117618; 71.
Protein-protein interaction databasesIntAct O43175; 25.
Protein-protein interaction databasesMINT MINT-4999739; -.
Protein-protein interaction databasesSTRING 9606.ENSP00000358417; -.
Enzyme and pathway databasesBioCyc MetaCyc:HS01776-MONOMER; -.
Enzyme and pathway databasesReactome REACT_115789; Serine biosynthesis.
Enzyme and pathway databasesUniPathway UPA00135; UER00196.
3D structure databasesPDB 2G76; X-ray; 1.70 A; A/B=4-315.
3D structure databasesPDBsum 2G76; -.
3D structure databasesProteinModelPortal O43175; -.
3D structure databasesSMR O43175; 6-307.
Protocols and materials databasesDNASU 26227; -.
Phylogenomic databaseseggNOG COG0111; -.
Phylogenomic databasesGeneTree ENSGT00530000063021; -.
Phylogenomic databasesHOGENOM HOG000136693; -.
Phylogenomic databasesHOVERGEN HBG054241; -.
Phylogenomic databasesInParanoid O43175; -.
Phylogenomic databasesKO K00058; -.
Phylogenomic databasesOMA DNTFAQC; -.
Phylogenomic databasesOrthoDB EOG7JT6WT; -.
Phylogenomic databasesPhylomeDB O43175; -.
Phylogenomic databasesTreeFam TF314548; -.
Organism-specific databasesCTD 26227; -.
Organism-specific databasesGeneCards GC01P120202; -.
Organism-specific databasesHGNC HGNC:8923; PHGDH.
Organism-specific databasesHPA CAB003681; -.
Organism-specific databasesHPA HPA021241; -.
Organism-specific databasesHPA HPA024031; -.
Organism-specific databasesMIM 256520; phenotype.
Organism-specific databasesMIM 601815; phenotype.
Organism-specific databasesMIM 606879; gene.
Organism-specific databasesneXtProt NX_O43175; -.
Organism-specific databasesOrphanet 79351; 3-phosphoglycerate dehydrogenase deficiency.
Organism-specific databasesOrphanet 2671; Neu-Laxova syndrome.
Organism-specific databasesPharmGKB PA33264; -.
ChemistryChEMBL CHEMBL2311243; -.
OtherChiTaRS PHGDH; human.
OtherEvolutionaryTrace O43175; -.
OtherGeneWiki Phosphoglycerate_dehydrogenase; -.
OtherGenomeRNAi 26227; -.
OtherNextBio 48383; -.
OtherPRO PR:O43175; -.



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