Cancer Cell Metabolism Gene Database

  Cancer Cell Metabolism Gene DB






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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory
Cross referenced IDs for 6207
* We obtained these cross-references from Uniprot database. It covers 150 different DBs, 18 categories.
DB CategoryDB NameDB's ID and Url link
Genome annotation databasesEnsembl ENST00000525634; ENSP00000435777; ENSG00000110700.
Genome annotation databasesGeneID 6207; -.
Genome annotation databasesKEGG hsa:6207; -.
Genome annotation databasesUCSC uc001mmp.3; human.
Sequence databasesCCDS CCDS7823.1; -.
Sequence databasesEMBL L01124; AAA60283.1; -; mRNA.
Sequence databasesEMBL X79239; CAA55821.1; -; mRNA.
Sequence databasesEMBL D88010; BAA13528.1; -; Genomic_DNA.
Sequence databasesEMBL AK312060; BAG34996.1; -; mRNA.
Sequence databasesEMBL CH471064; EAW68448.1; -; Genomic_DNA.
Sequence databasesEMBL BC000475; AAH00475.1; -; mRNA.
Sequence databasesEMBL BC006772; AAH06772.1; -; mRNA.
Sequence databasesEMBL BC029732; AAH29732.1; -; mRNA.
Sequence databasesEMBL BC066322; AAH66322.1; -; mRNA.
Sequence databasesEMBL BC100032; AAI00033.1; -; mRNA.
Sequence databasesEMBL L05090; AAC15854.1; -; mRNA.
Sequence databasesPIR S34109; S34109.
Sequence databasesRefSeq NP_001008.1; NM_001017.2.
Sequence databasesUniGene Hs.446588; -.
Polymorphism databasesDMDM 50403608; -.
Gene expression databasesBgee P62277; -.
Gene expression databasesCleanEx HS_RPS13; -.
Gene expression databasesExpressionAtlas P62277; baseline.
Gene expression databasesGenevestigator P62277; -.
OntologiesGO GO:0005829; C:cytosol; TAS:Reactome.
OntologiesGO GO:0022627; C:cytosolic small ribosomal subunit; IDA:UniProtKB.
OntologiesGO GO:0070062; C:extracellular vesicular exosome; IDA:UniProt.
OntologiesGO GO:0005925; C:focal adhesion; IDA:UniProtKB.
OntologiesGO GO:0016020; C:membrane; IDA:UniProtKB.
OntologiesGO GO:0005730; C:nucleolus; IDA:UniProtKB.
OntologiesGO GO:0005634; C:nucleus; IDA:UniProtKB.
OntologiesGO GO:0005840; C:ribosome; NAS:UniProtKB.
OntologiesGO GO:0003729; F:mRNA binding; IDA:UniProtKB.
OntologiesGO GO:0044822; F:poly(A) RNA binding; IDA:UniProtKB.
OntologiesGO GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
OntologiesGO GO:0044267; P:cellular protein metabolic process; TAS:Reactome.
OntologiesGO GO:0010467; P:gene expression; TAS:Reactome.
OntologiesGO GO:0016071; P:mRNA metabolic process; TAS:Reactome.
OntologiesGO GO:0033119; P:negative regulation of RNA splicing; IDA:UniProtKB.
OntologiesGO GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; TAS:Reactome.
OntologiesGO GO:0016070; P:RNA metabolic process; TAS:Reactome.
OntologiesGO GO:0006614; P:SRP-dependent cotranslational protein targeting to membrane; TAS:Reactome.
OntologiesGO GO:0006412; P:translation; IC:UniProtKB.
OntologiesGO GO:0006414; P:translational elongation; TAS:Reactome.
OntologiesGO GO:0006413; P:translational initiation; TAS:Reactome.
OntologiesGO GO:0006415; P:translational termination; TAS:Reactome.
OntologiesGO GO:0019058; P:viral life cycle; TAS:Reactome.
OntologiesGO GO:0016032; P:viral process; TAS:Reactome.
OntologiesGO GO:0019083; P:viral transcription; TAS:Reactome.
Proteomic databasesMaxQB P62277; -.
Proteomic databasesPaxDb P62277; -.
Proteomic databasesPeptideAtlas P62277; -.
Proteomic databasesPRIDE P62277; -.
Family and domain databasesHAMAP MF_01343_A; Ribosomal_S15_A; 1.
Family and domain databasesInterPro IPR012606; Ribosomal_S13/S15_N.
Family and domain databasesInterPro IPR000589; Ribosomal_S15.
Family and domain databasesInterPro IPR023029; Ribosomal_S15P.
Family and domain databasesInterPro IPR009068; S15_NS1_RNA-bd.
Family and domain databasesPfam PF08069; Ribosomal_S13_N; 1.
Family and domain databasesPfam PF00312; Ribosomal_S15; 1.
Family and domain databasesPROSITE PS00362; RIBOSOMAL_S15; 1.
Family and domain databasesSUPFAM SSF47060; SSF47060; 1.
PTM databasesPhosphoSite P62277; -.
Protein-protein interaction databasesBioGrid 112121; 142.
Protein-protein interaction databasesIntAct P62277; 27.
Protein-protein interaction databasesMINT MINT-4999984; -.
Protein-protein interaction databasesSTRING 9606.ENSP00000228140; -.
Enzyme and pathway databasesReactome REACT_1079; Formation of the ternary complex, and subsequently, the 43S complex.
Enzyme and pathway databasesReactome REACT_115902; SRP-dependent cotranslational protein targeting to membrane.
Enzyme and pathway databasesReactome REACT_1404; Peptide chain elongation.
Enzyme and pathway databasesReactome REACT_1797; Formation of a pool of free 40S subunits.
Enzyme and pathway databasesReactome REACT_1979; Translation initiation complex formation.
Enzyme and pathway databasesReactome REACT_1986; Eukaryotic Translation Termination.
Enzyme and pathway databasesReactome REACT_2085; GTP hydrolysis and joining of the 60S ribosomal subunit.
Enzyme and pathway databasesReactome REACT_75768; Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
Enzyme and pathway databasesReactome REACT_75822; Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
Enzyme and pathway databasesReactome REACT_79; L13a-mediated translational silencing of Ceruloplasmin expression.
Enzyme and pathway databasesReactome REACT_931; Ribosomal scanning and start codon recognition.
Enzyme and pathway databasesReactome REACT_9491; Viral mRNA Translation.
3D structure databasesPDB 3J3A; EM; 5.00 A; N=1-151.
3D structure databasesPDBsum 3J3A; -.
3D structure databasesProteinModelPortal P62277; -.
3D structure databasesSMR P62277; 2-151.
Protocols and materials databasesDNASU 6207; -.
Phylogenomic databaseseggNOG COG0184; -.
Phylogenomic databasesGeneTree ENSGT00390000017491; -.
Phylogenomic databasesHOGENOM HOG000180723; -.
Phylogenomic databasesHOVERGEN HBG000938; -.
Phylogenomic databasesInParanoid P62277; -.
Phylogenomic databasesKO K02953; -.
Phylogenomic databasesOMA NWKYESA; -.
Phylogenomic databasesPhylomeDB P62277; -.
Phylogenomic databasesTreeFam TF300190; -.
Organism-specific databasesCTD 6207; -.
Organism-specific databasesGeneCards GC11M017095; -.
Organism-specific databasesHGNC HGNC:10386; RPS13.
Organism-specific databasesHPA HPA005985; -.
Organism-specific databasesMIM 180476; gene.
Organism-specific databasesneXtProt NX_P62277; -.
Organism-specific databasesPharmGKB PA34785; -.
OtherChiTaRS RPS13; human.
OtherGeneWiki RPS13; -.
OtherGenomeRNAi 6207; -.
OtherNextBio 24107; -.
OtherPRO PR:P62277; -.

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