Cancer Cell Metabolism Gene Database

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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory
Cross referenced IDs for 6256
* We obtained these cross-references from Uniprot database. It covers 150 different DBs, 18 categories. http://www.uniprot.org/help/cross_references_section
DB CategoryDB NameDB's ID and Url link
Genome annotation databasesEnsembl ENST00000481739; ENSP00000419692; ENSG00000186350. [P19793-1]
Genome annotation databasesGeneID 6256; -.
Genome annotation databasesKEGG hsa:6256; -.
Genome annotation databasesUCSC uc004cfb.2; human. [P19793-1]
Sequence databasesCCDS CCDS35172.1; -. [P19793-1]
Sequence databasesEMBL X52773; CAA36982.1; -; mRNA.
Sequence databasesEMBL AB307705; BAH02296.1; -; mRNA.
Sequence databasesEMBL AK131192; BAG54745.1; -; mRNA.
Sequence databasesEMBL AC156789; -; NOT_ANNOTATED_CDS; Genomic_DNA.
Sequence databasesEMBL AL354796; CAH70571.1; -; Genomic_DNA.
Sequence databasesEMBL AL669970; CAH70571.1; JOINED; Genomic_DNA.
Sequence databasesEMBL AL669970; CAM45733.1; -; Genomic_DNA.
Sequence databasesEMBL AL354796; CAM45733.1; JOINED; Genomic_DNA.
Sequence databasesEMBL AL683798; -; NOT_ANNOTATED_CDS; Genomic_DNA.
Sequence databasesEMBL CH471090; EAW88123.1; -; Genomic_DNA.
Sequence databasesEMBL BC110998; AAI10999.1; -; mRNA.
Sequence databasesEMBL DQ303444; ABB96254.1; -; Genomic_DNA.
Sequence databasesPIR S09592; S09592.
Sequence databasesRefSeq NP_001278850.1; NM_001291921.1. [P19793-2]
Sequence databasesRefSeq NP_002948.1; NM_002957.5. [P19793-1]
Sequence databasesUniGene Hs.590886; -.
Polymorphism databasesDMDM 133701; -.
Gene expression databasesBgee P19793; -.
Gene expression databasesCleanEx HS_RXRA; -.
Gene expression databasesExpressionAtlas P19793; baseline and differential.
Gene expression databasesGenevestigator P19793; -.
OntologiesGO GO:0000790; C:nuclear chromatin; IDA:BHF-UCL.
OntologiesGO GO:0005654; C:nucleoplasm; TAS:Reactome.
OntologiesGO GO:0005634; C:nucleus; IDA:UniProtKB.
OntologiesGO GO:0004886; F:9-cis retinoic acid receptor activity; TAS:ProtInc.
OntologiesGO GO:0031490; F:chromatin DNA binding; IEA:Ensembl.
OntologiesGO GO:0003677; F:DNA binding; IDA:MGI.
OntologiesGO GO:0019899; F:enzyme binding; IPI:UniProtKB.
OntologiesGO GO:0004879; F:ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity; IDA:BHF-UCL.
OntologiesGO GO:0046982; F:protein heterodimerization activity; IDA:UniProtKB.
OntologiesGO GO:0003708; F:retinoic acid receptor activity; TAS:BHF-UCL.
OntologiesGO GO:0044323; F:retinoic acid-responsive element binding; IDA:UniProtKB.
OntologiesGO GO:0000977; F:RNA polymerase II regulatory region sequence-specific DNA binding; IDA:MGI.
OntologiesGO GO:0003700; F:sequence-specific DNA binding transcription factor activity; IDA:UniProtKB.
OntologiesGO GO:0003707; F:steroid hormone receptor activity; IEA:InterPro.
OntologiesGO GO:0003713; F:transcription coactivator activity; TAS:ProtInc.
OntologiesGO GO:0042809; F:vitamin D receptor binding; IPI:BHF-UCL.
OntologiesGO GO:0008270; F:zinc ion binding; IEA:InterPro.
OntologiesGO GO:0043010; P:camera-type eye development; IEA:Ensembl.
OntologiesGO GO:0060038; P:cardiac muscle cell proliferation; IEA:Ensembl.
OntologiesGO GO:0044255; P:cellular lipid metabolic process; TAS:Reactome.
OntologiesGO GO:0008203; P:cholesterol metabolic process; TAS:BHF-UCL.
OntologiesGO GO:0007566; P:embryo implantation; IEA:Ensembl.
OntologiesGO GO:0010467; P:gene expression; TAS:Reactome.
OntologiesGO GO:0001701; P:in utero embryonic development; IEA:Ensembl.
OntologiesGO GO:0001893; P:maternal placenta development; IEA:Ensembl.
OntologiesGO GO:0019048; P:modulation by virus of host morphology or physiology; IDA:UniProtKB.
OntologiesGO GO:0000122; P:negative regulation of transcription from RNA polymerase II promoter; IDA:BHF-UCL.
OntologiesGO GO:0035357; P:peroxisome proliferator activated receptor signaling pathway; IDA:UniProtKB.
OntologiesGO GO:0045944; P:positive regulation of transcription from RNA polymerase II promoter; IDA:UniProtKB.
OntologiesGO GO:0051289; P:protein homotetramerization; IDA:MGI.
OntologiesGO GO:0060687; P:regulation of branching involved in prostate gland morphogenesis; IEA:Ensembl.
OntologiesGO GO:0032526; P:response to retinoic acid; IMP:BHF-UCL.
OntologiesGO GO:0048384; P:retinoic acid receptor signaling pathway; IMP:BHF-UCL.
OntologiesGO GO:0060528; P:secretory columnal luminar epithelial cell differentiation involved in prostate glandular acinus development; IEA:Ensembl.
OntologiesGO GO:0044281; P:small molecule metabolic process; TAS:Reactome.
OntologiesGO GO:0006367; P:transcription initiation from RNA polymerase II promoter; TAS:Reactome.
OntologiesGO GO:0055012; P:ventricular cardiac muscle cell differentiation; IEA:Ensembl.
OntologiesGO GO:0055010; P:ventricular cardiac muscle tissue morphogenesis; IEA:Ensembl.
OntologiesGO GO:0006766; P:vitamin metabolic process; TAS:ProtInc.
Proteomic databasesMaxQB P19793; -.
Proteomic databasesPaxDb P19793; -.
Proteomic databasesPRIDE P19793; -.
Family and domain databasesGene3D 1.10.565.10; -; 1.
Family and domain databasesGene3D 3.30.50.10; -; 1.
Family and domain databasesInterPro IPR021780; Nuc_recep-AF1.
Family and domain databasesInterPro IPR008946; Nucl_hormone_rcpt_ligand-bd.
Family and domain databasesInterPro IPR000536; Nucl_hrmn_rcpt_lig-bd_core.
Family and domain databasesInterPro IPR000003; Retinoid-X_rcpt/HNF4.
Family and domain databasesInterPro IPR001723; Str_hrmn_rcpt.
Family and domain databasesInterPro IPR001628; Znf_hrmn_rcpt.
Family and domain databasesInterPro IPR013088; Znf_NHR/GATA.
Family and domain databasesPfam PF00104; Hormone_recep; 1.
Family and domain databasesPfam PF11825; Nuc_recep-AF1; 1.
Family and domain databasesPfam PF00105; zf-C4; 1.
Family and domain databasesPRINTS PR00545; RETINOIDXR.
Family and domain databasesPRINTS PR00398; STRDHORMONER.
Family and domain databasesPRINTS PR00047; STROIDFINGER.
Family and domain databasesPROSITE PS00031; NUCLEAR_REC_DBD_1; 1.
Family and domain databasesPROSITE PS51030; NUCLEAR_REC_DBD_2; 1.
Family and domain databasesSMART SM00430; HOLI; 1.
Family and domain databasesSMART SM00399; ZnF_C4; 1.
Family and domain databasesSUPFAM SSF48508; SSF48508; 1.
PTM databasesPhosphoSite P19793; -.
Protein-protein interaction databasesBioGrid 112168; 108.
Protein-protein interaction databasesDIP DIP-641N; -.
Protein-protein interaction databasesIntAct P19793; 39.
Protein-protein interaction databasesMINT MINT-98407; -.
Protein-protein interaction databasesSTRING 9606.ENSP00000419692; -.
Enzyme and pathway databasesReactome REACT_11041; Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol.
Enzyme and pathway databasesReactome REACT_11042; Recycling of bile acids and salts.
Enzyme and pathway databasesReactome REACT_11048; Synthesis of bile acids and bile salts via 27-hydroxycholesterol.
Enzyme and pathway databasesReactome REACT_11054; Synthesis of bile acids and bile salts.
Enzyme and pathway databasesReactome REACT_11082; Import of palmitoyl-CoA into the mitochondrial matrix.
Enzyme and pathway databasesReactome REACT_111118; BMAL1:CLOCK,NPAS2 activates circadian gene expression.
Enzyme and pathway databasesReactome REACT_116145; PPARA activates gene expression.
Enzyme and pathway databasesReactome REACT_118659; RORA activates circadian gene expression.
Enzyme and pathway databasesReactome REACT_118713; YAP1- and WWTR1 (TAZ)-stimulated gene expression.
Enzyme and pathway databasesReactome REACT_118789; REV-ERBA represses gene expression.
Enzyme and pathway databasesReactome REACT_12528; Regulation of pyruvate dehydrogenase (PDH) complex.
Enzyme and pathway databasesReactome REACT_13812; Endogenous sterols.
Enzyme and pathway databasesReactome REACT_147904; Activation of gene expression by SREBF (SREBP).
Enzyme and pathway databasesReactome REACT_15525; Nuclear Receptor transcription pathway.
Enzyme and pathway databasesReactome REACT_19241; Regulation of lipid metabolism by Peroxisome proliferator-activated receptor alpha (PPARalpha).
Enzyme and pathway databasesReactome REACT_200608; Transcriptional activation of mitochondrial biogenesis.
Enzyme and pathway databasesReactome REACT_24941; Circadian Clock.
Enzyme and pathway databasesReactome REACT_267716; Orphan transporters.
Enzyme and pathway databasesReactome REACT_27161; Transcriptional regulation of white adipocyte differentiation.
Enzyme and pathway databasesSignaLink P19793; -.
3D structure databasesDisProt DP00062; -.
3D structure databasesPDB 1BY4; X-ray; 2.10 A; A/B/C/D=129-209.
3D structure databasesPDB 1DSZ; X-ray; 1.70 A; B=129-212.
3D structure databasesPDB 1FBY; X-ray; 2.25 A; A/B=224-462.
3D structure databasesPDB 1FM6; X-ray; 2.10 A; A/U=225-462.
3D structure databasesPDB 1FM9; X-ray; 2.10 A; A=225-462.
3D structure databasesPDB 1G1U; X-ray; 2.50 A; A/B/C/D=225-462.
3D structure databasesPDB 1G5Y; X-ray; 2.00 A; A/B/C/D=225-462.
3D structure databasesPDB 1K74; X-ray; 2.30 A; A=225-462.
3D structure databasesPDB 1LBD; X-ray; 2.70 A; A=201-460.
3D structure databasesPDB 1MV9; X-ray; 1.90 A; A=223-462.
3D structure databasesPDB 1MVC; X-ray; 1.90 A; A=223-462.
3D structure databasesPDB 1MZN; X-ray; 1.90 A; A/C/E/G=223-462.
3D structure databasesPDB 1R0N; X-ray; 2.60 A; A=130-206.
3D structure databasesPDB 1RDT; X-ray; 2.40 A; A=225-462.
3D structure databasesPDB 1RXR; NMR; -; A=130-212.
3D structure databasesPDB 1XLS; X-ray; 2.96 A; A/B/C/D=227-458.
3D structure databasesPDB 1XV9; X-ray; 2.70 A; A/C=227-462.
3D structure databasesPDB 1XVP; X-ray; 2.60 A; A/C=227-462.
3D structure databasesPDB 1YNW; X-ray; 3.00 A; B=130-228.
3D structure databasesPDB 2ACL; X-ray; 2.80 A; A/C/E/G=225-462.
3D structure databasesPDB 2NLL; X-ray; 1.90 A; A=135-200.
3D structure databasesPDB 2P1T; X-ray; 1.80 A; A=223-462.
3D structure databasesPDB 2P1U; X-ray; 2.20 A; A=223-462.
3D structure databasesPDB 2P1V; X-ray; 2.20 A; A=223-462.
3D structure databasesPDB 2ZXZ; X-ray; 3.00 A; A=223-462.
3D structure databasesPDB 2ZY0; X-ray; 2.90 A; A/C=223-462.
3D structure databasesPDB 3DZU; X-ray; 3.20 A; A=11-462.
3D structure databasesPDB 3DZY; X-ray; 3.10 A; A=11-462.
3D structure databasesPDB 3E00; X-ray; 3.10 A; A=11-462.
3D structure databasesPDB 3E94; X-ray; 1.90 A; A=223-462.
3D structure databasesPDB 3FAL; X-ray; 2.36 A; A/C=225-462.
3D structure databasesPDB 3FC6; X-ray; 2.06 A; A/C=225-462.
3D structure databasesPDB 3FUG; X-ray; 2.00 A; A=223-462.
3D structure databasesPDB 3H0A; X-ray; 2.10 A; A=228-455.
3D structure databasesPDB 3KWY; X-ray; 2.30 A; A=223-462.
3D structure databasesPDB 3NSP; X-ray; 2.90 A; A/B=223-462.
3D structure databasesPDB 3NSQ; X-ray; 2.60 A; A/B=223-462.
3D structure databasesPDB 3OAP; X-ray; 2.05 A; A=228-458.
3D structure databasesPDB 3OZJ; X-ray; 2.10 A; A/C=225-462.
3D structure databasesPDB 3PCU; X-ray; 2.00 A; A=229-458.
3D structure databasesPDB 3R29; X-ray; 2.90 A; A/B=223-462.
3D structure databasesPDB 3R2A; X-ray; 3.00 A; A/B/C/D=223-462.
3D structure databasesPDB 3R5M; X-ray; 2.80 A; A/C=223-462.
3D structure databasesPDB 3UVV; X-ray; 2.95 A; B=225-462.
3D structure databasesPDB 4J5W; X-ray; 2.80 A; C/D=227-462.
3D structure databasesPDB 4J5X; X-ray; 2.80 A; C/D=227-462.
3D structure databasesPDB 4K4J; X-ray; 2.00 A; A=228-458.
3D structure databasesPDB 4K6I; X-ray; 2.10 A; A=228-458.
3D structure databasesPDB 4M8E; X-ray; 2.40 A; A=228-458.
3D structure databasesPDB 4M8H; X-ray; 2.20 A; A=228-458.
3D structure databasesPDB 4N5G; X-ray; 2.11 A; A/B/C/D=223-462.
3D structure databasesPDB 4N8R; X-ray; 2.03 A; A/B/C/D=223-462.
3D structure databasesPDB 4NQA; X-ray; 3.10 A; A/H=98-462.
3D structure databasesPDB 4OC7; X-ray; 2.50 A; A=223-462.
3D structure databasesPDB 4POH; X-ray; 2.30 A; A=228-458.
3D structure databasesPDB 4POJ; X-ray; 2.00 A; A=228-458.
3D structure databasesPDB 4PP3; X-ray; 2.00 A; A=228-458.
3D structure databasesPDB 4PP5; X-ray; 2.00 A; A=228-458.
3D structure databasesPDBsum 1BY4; -.
3D structure databasesPDBsum 1DSZ; -.
3D structure databasesPDBsum 1FBY; -.
3D structure databasesPDBsum 1FM6; -.
3D structure databasesPDBsum 1FM9; -.
3D structure databasesPDBsum 1G1U; -.
3D structure databasesPDBsum 1G5Y; -.
3D structure databasesPDBsum 1K74; -.
3D structure databasesPDBsum 1LBD; -.
3D structure databasesPDBsum 1MV9; -.
3D structure databasesPDBsum 1MVC; -.
3D structure databasesPDBsum 1MZN; -.
3D structure databasesPDBsum 1R0N; -.
3D structure databasesPDBsum 1RDT; -.
3D structure databasesPDBsum 1RXR; -.
3D structure databasesPDBsum 1XLS; -.
3D structure databasesPDBsum 1XV9; -.
3D structure databasesPDBsum 1XVP; -.
3D structure databasesPDBsum 1YNW; -.
3D structure databasesPDBsum 2ACL; -.
3D structure databasesPDBsum 2NLL; -.
3D structure databasesPDBsum 2P1T; -.
3D structure databasesPDBsum 2P1U; -.
3D structure databasesPDBsum 2P1V; -.
3D structure databasesPDBsum 2ZXZ; -.
3D structure databasesPDBsum 2ZY0; -.
3D structure databasesPDBsum 3DZU; -.
3D structure databasesPDBsum 3DZY; -.
3D structure databasesPDBsum 3E00; -.
3D structure databasesPDBsum 3E94; -.
3D structure databasesPDBsum 3FAL; -.
3D structure databasesPDBsum 3FC6; -.
3D structure databasesPDBsum 3FUG; -.
3D structure databasesPDBsum 3H0A; -.
3D structure databasesPDBsum 3KWY; -.
3D structure databasesPDBsum 3NSP; -.
3D structure databasesPDBsum 3NSQ; -.
3D structure databasesPDBsum 3OAP; -.
3D structure databasesPDBsum 3OZJ; -.
3D structure databasesPDBsum 3PCU; -.
3D structure databasesPDBsum 3R29; -.
3D structure databasesPDBsum 3R2A; -.
3D structure databasesPDBsum 3R5M; -.
3D structure databasesPDBsum 3UVV; -.
3D structure databasesPDBsum 4J5W; -.
3D structure databasesPDBsum 4J5X; -.
3D structure databasesPDBsum 4K4J; -.
3D structure databasesPDBsum 4K6I; -.
3D structure databasesPDBsum 4M8E; -.
3D structure databasesPDBsum 4M8H; -.
3D structure databasesPDBsum 4N5G; -.
3D structure databasesPDBsum 4N8R; -.
3D structure databasesPDBsum 4NQA; -.
3D structure databasesPDBsum 4OC7; -.
3D structure databasesPDBsum 4POH; -.
3D structure databasesPDBsum 4POJ; -.
3D structure databasesPDBsum 4PP3; -.
3D structure databasesPDBsum 4PP5; -.
3D structure databasesProteinModelPortal P19793; -.
3D structure databasesSMR P19793; 127-459.
Protocols and materials databasesDNASU 6256; -.
Phylogenomic databaseseggNOG NOG327099; -.
Phylogenomic databasesGeneTree ENSGT00760000118948; -.
Phylogenomic databasesHOVERGEN HBG005606; -.
Phylogenomic databasesInParanoid P19793; -.
Phylogenomic databasesKO K08524; -.
Phylogenomic databasesOMA KHFLPLD; -.
Phylogenomic databasesPhylomeDB P19793; -.
Phylogenomic databasesTreeFam TF352097; -.
Organism-specific databasesCTD 6256; -.
Organism-specific databasesGeneCards GC09P137208; -.
Organism-specific databasesHGNC HGNC:10477; RXRA.
Organism-specific databasesHPA CAB004565; -.
Organism-specific databasesHPA CAB005352; -.
Organism-specific databasesMIM 180245; gene.
Organism-specific databasesneXtProt NX_P19793; -.
Organism-specific databasesPharmGKB PA34890; -.
ChemistryBindingDB P19793; -.
ChemistryChEMBL CHEMBL2363071; -.
ChemistryDrugBank DB00459; Acitretin.
ChemistryDrugBank DB00210; Adapalene.
ChemistryDrugBank DB00523; Alitretinoin.
ChemistryDrugBank DB00307; Bexarotene.
ChemistryDrugBank DB00749; Etodolac.
ChemistryGuidetoPHARMACOLOGY 610; -.
OtherChiTaRS RXRA; human.
OtherEvolutionaryTrace P19793; -.
OtherGeneWiki Retinoid_X_receptor_alpha; -.
OtherGenomeRNAi 6256; -.
OtherNextBio 24295; -.
OtherPMAP-CutDB P19793; -.
OtherPRO PR:P19793; -.



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