Cancer Cell Metabolism Gene Database

  Cancer Cell Metabolism Gene DB

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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory
Cross referenced IDs for 6635
* We obtained these cross-references from Uniprot database. It covers 150 different DBs, 18 categories. http://www.uniprot.org/help/cross_references_section
DB CategoryDB NameDB's ID and Url link
Genome annotation databasesEnsembl ENST00000414487; ENSP00000400591; ENSG00000182004.
Genome annotation databasesGeneID 6635; -.
Genome annotation databasesKEGG hsa:6635; -.
Genome annotation databasesUCSC uc001hai.3; human.
Sequence databasesCCDS CCDS30979.1; -.
Sequence databasesEMBL M37716; AAA90926.1; -; mRNA.
Sequence databasesEMBL M15919; AAA36621.1; -; mRNA.
Sequence databasesEMBL X12466; CAA31007.1; -; mRNA.
Sequence databasesEMBL AK312130; BAG35066.1; -; mRNA.
Sequence databasesEMBL CH471067; EAW91494.1; -; Genomic_DNA.
Sequence databasesEMBL BC002639; AAH02639.1; -; mRNA.
Sequence databasesEMBL BC090951; AAH90951.1; -; mRNA.
Sequence databasesEMBL M21258; AAB59365.1; ALT_SEQ; Genomic_DNA.
Sequence databasesEMBL M21253; AAB59365.1; JOINED; Genomic_DNA.
Sequence databasesPIR A32127; A32127.
Sequence databasesRefSeq NP_003085.1; NM_003094.2.
Sequence databasesUniGene Hs.334612; -.
Sequence databasesUniGene Hs.654418; -.
Polymorphism databasesDMDM 61237380; -.
Gene expression databasesBgee P62304; -.
Gene expression databasesCleanEx HS_SNRPE; -.
Gene expression databasesExpressionAtlas P62304; baseline.
Gene expression databasesGenevestigator P62304; -.
OntologiesGO GO:0071013; C:catalytic step 2 spliceosome; IDA:UniProtKB.
OntologiesGO GO:0005829; C:cytosol; IDA:UniProtKB.
OntologiesGO GO:0070062; C:extracellular vesicular exosome; IDA:UniProt.
OntologiesGO GO:0034709; C:methylosome; IDA:UniProtKB.
OntologiesGO GO:0005654; C:nucleoplasm; TAS:Reactome.
OntologiesGO GO:0005634; C:nucleus; IDA:UniProtKB.
OntologiesGO GO:0034715; C:pICln-Sm protein complex; IDA:UniProtKB.
OntologiesGO GO:0030532; C:small nuclear ribonucleoprotein complex; NAS:UniProtKB.
OntologiesGO GO:0034719; C:SMN-Sm protein complex; IDA:UniProtKB.
OntologiesGO GO:0005681; C:spliceosomal complex; NAS:UniProtKB.
OntologiesGO GO:0005685; C:U1 snRNP; IDA:UniProtKB.
OntologiesGO GO:0005689; C:U12-type spliceosomal complex; IDA:UniProtKB.
OntologiesGO GO:0005687; C:U4 snRNP; IDA:UniProtKB.
OntologiesGO GO:0005683; C:U7 snRNP; IDA:UniProtKB.
OntologiesGO GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
OntologiesGO GO:0010467; P:gene expression; TAS:Reactome.
OntologiesGO GO:0042633; P:hair cycle; IMP:UniProtKB.
OntologiesGO GO:0008334; P:histone mRNA metabolic process; TAS:Reactome.
OntologiesGO GO:0031124; P:mRNA 3'-end processing; TAS:Reactome.
OntologiesGO GO:0000398; P:mRNA splicing, via spliceosome; IC:UniProtKB.
OntologiesGO GO:0034660; P:ncRNA metabolic process; TAS:Reactome.
OntologiesGO GO:0016070; P:RNA metabolic process; TAS:Reactome.
OntologiesGO GO:0008380; P:RNA splicing; TAS:Reactome.
OntologiesGO GO:0000245; P:spliceosomal complex assembly; NAS:UniProtKB.
OntologiesGO GO:0000387; P:spliceosomal snRNP assembly; IDA:UniProtKB.
OntologiesGO GO:0006369; P:termination of RNA polymerase II transcription; TAS:Reactome.
OntologiesGO GO:0006366; P:transcription from RNA polymerase II promoter; TAS:Reactome.
Proteomic databasesMaxQB P62304; -.
Proteomic databasesPaxDb P62304; -.
Proteomic databasesPRIDE P62304; -.
Family and domain databasesInterPro IPR010920; LSM_dom.
Family and domain databasesInterPro IPR001163; Ribonucl_LSM.
Family and domain databasesInterPro IPR006649; Ribonucl_LSM_euk/arc.
Family and domain databasesInterPro IPR027078; snRNP-E.
Family and domain databasesPANTHER PTHR11193; PTHR11193; 1.
Family and domain databasesPfam PF01423; LSM; 1.
Family and domain databasesSMART SM00651; Sm; 1.
Family and domain databasesSUPFAM SSF50182; SSF50182; 1.
PTM databasesPhosphoSite P62304; -.
Protein-protein interaction databasesBioGrid 112519; 54.
Protein-protein interaction databasesDIP DIP-31220N; -.
Protein-protein interaction databasesIntAct P62304; 29.
Protein-protein interaction databasesMINT MINT-225773; -.
Protein-protein interaction databasesSTRING 9606.ENSP00000400591; -.
Enzyme and pathway databasesReactome REACT_11066; snRNP Assembly.
Enzyme and pathway databasesReactome REACT_1364; SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs.
Enzyme and pathway databasesReactome REACT_1753; mRNA Splicing - Minor Pathway.
Enzyme and pathway databasesReactome REACT_185; SLBP independent Processing of Histone Pre-mRNAs.
Enzyme and pathway databasesReactome REACT_467; mRNA Splicing - Major Pathway.
3D structure databasesPDB 1VU2; X-ray; 3.10 A; C/K/S/a/i/q/y=1-92.
3D structure databasesPDB 1VU3; X-ray; 3.10 A; C/K/S/a/i/q=1-92.
3D structure databasesPDB 2Y9A; X-ray; 3.60 A; E/L/S=1-92.
3D structure databasesPDB 2Y9B; X-ray; 3.60 A; E/L/S=1-92.
3D structure databasesPDB 2Y9C; X-ray; 3.60 A; E/L/S=1-92.
3D structure databasesPDB 2Y9D; X-ray; 3.60 A; E/L/S=1-92.
3D structure databasesPDB 3CW1; X-ray; 5.49 A; E/W/X/Y=1-92.
3D structure databasesPDB 3PGW; X-ray; 4.40 A; E/H=1-92.
3D structure databasesPDB 3S6N; X-ray; 2.50 A; E=1-92.
3D structure databasesPDB 4F77; X-ray; 3.10 A; C/K/S/a/i/q/y=1-92.
3D structure databasesPDB 4F7U; X-ray; 1.90 A; E/H=1-92.
3D structure databasesPDBsum 1VU2; -.
3D structure databasesPDBsum 1VU3; -.
3D structure databasesPDBsum 2Y9A; -.
3D structure databasesPDBsum 2Y9B; -.
3D structure databasesPDBsum 2Y9C; -.
3D structure databasesPDBsum 2Y9D; -.
3D structure databasesPDBsum 3CW1; -.
3D structure databasesPDBsum 3PGW; -.
3D structure databasesPDBsum 3S6N; -.
3D structure databasesPDBsum 4F77; -.
3D structure databasesPDBsum 4F7U; -.
3D structure databasesProteinModelPortal P62304; -.
3D structure databasesSMR P62304; 14-91.
Protocols and materials databasesDNASU 6635; -.
Phylogenomic databaseseggNOG COG1958; -.
Phylogenomic databasesGeneTree ENSGT00390000012818; -.
Phylogenomic databasesHOVERGEN HBG003229; -.
Phylogenomic databasesInParanoid P62304; -.
Phylogenomic databasesKO K11097; -.
Phylogenomic databasesOMA FDEFMNI; -.
Phylogenomic databasesOrthoDB EOG7GFB5W; -.
Phylogenomic databasesPhylomeDB P62304; -.
Phylogenomic databasesTreeFam TF314419; -.
Organism-specific databasesCTD 6635; -.
Organism-specific databasesGeneCards GC01P203839; -.
Organism-specific databasesHGNC HGNC:11161; SNRPE.
Organism-specific databasesMIM 128260; gene.
Organism-specific databasesMIM 615059; phenotype.
Organism-specific databasesneXtProt NX_P62304; -.
Organism-specific databasesOrphanet 55654; Hypotrichosis simplex.
Organism-specific databasesPharmGKB PA36002; -.
OtherChiTaRS SNRPE; human.
OtherEvolutionaryTrace P62304; -.
OtherGenomeRNAi 6635; -.
OtherNextBio 25849; -.
OtherPRO PR:P62304; -.



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