Cancer Cell Metabolism Gene Database

  Cancer Cell Metabolism Gene DB

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Bioinformatics and Systems Medicine Laboratory Bioinformatics and Systems Medicine Laboratory
Cross referenced IDs for 54464
* We obtained these cross-references from Uniprot database. It covers 150 different DBs, 18 categories. http://www.uniprot.org/help/cross_references_section
DB CategoryDB NameDB's ID and Url link
Genome annotation databasesEnsembl ENST00000264951; ENSP00000264951; ENSG00000114127. [Q8IZH2-1]
Genome annotation databasesEnsembl ENST00000392981; ENSP00000376707; ENSG00000114127. [Q8IZH2-2]
Genome annotation databasesEnsembl ENST00000463916; ENSP00000418404; ENSG00000114127. [Q8IZH2-3]
Genome annotation databasesGeneID 54464; -.
Genome annotation databasesKEGG hsa:54464; -.
Genome annotation databasesUCSC uc003eus.3; human. [Q8IZH2-1]
Genome annotation databasesUCSC uc003euu.3; human. [Q8IZH2-2]
Genome annotation databasesUCSC uc003euw.3; human. [Q8IZH2-3]
Sequence databasesCCDS CCDS3123.1; -. [Q8IZH2-1]
Sequence databasesCCDS CCDS63801.1; -. [Q8IZH2-2]
Sequence databasesCCDS CCDS75028.1; -. [Q8IZH2-3]
Sequence databasesEMBL AY137776; AAN11306.1; -; mRNA.
Sequence databasesEMBL AL133623; CAB63749.1; -; mRNA.
Sequence databasesEMBL BX640905; CAE45950.1; -; mRNA.
Sequence databasesEMBL CR627396; CAH10490.1; -; mRNA.
Sequence databasesEMBL CR749518; CAH18332.1; -; mRNA.
Sequence databasesEMBL BC039314; AAH39314.1; -; mRNA.
Sequence databasesEMBL BC048104; AAH48104.1; -; mRNA.
Sequence databasesEMBL AK096177; BAC04718.1; -; mRNA.
Sequence databasesPIR T43461; T43461.
Sequence databasesRefSeq NP_001269786.1; NM_001282857.1. [Q8IZH2-2]
Sequence databasesRefSeq NP_001269788.1; NM_001282859.1. [Q8IZH2-3]
Sequence databasesRefSeq NP_061874.3; NM_019001.4. [Q8IZH2-1]
Sequence databasesUniGene Hs.435103; -.
Polymorphism databasesDMDM 74714582; -.
Gene expression databasesBgee Q8IZH2; -.
Gene expression databasesCleanEx HS_XRN1; -.
Gene expression databasesExpressionAtlas Q8IZH2; baseline and differential.
Gene expression databasesGenevestigator Q8IZH2; -.
OntologiesGO GO:0000932; C:cytoplasmic mRNA processing body; IEA:Ensembl.
OntologiesGO GO:0005829; C:cytosol; TAS:Reactome.
OntologiesGO GO:0016020; C:membrane; IDA:UniProtKB.
OntologiesGO GO:0008409; F:5'-3' exonuclease activity; IEA:InterPro.
OntologiesGO GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
OntologiesGO GO:0044822; F:poly(A) RNA binding; IDA:UniProtKB.
OntologiesGO GO:0043928; P:exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay; TAS:Reactome.
OntologiesGO GO:0010467; P:gene expression; TAS:Reactome.
OntologiesGO GO:0071044; P:histone mRNA catabolic process; IMP:UniProtKB.
OntologiesGO GO:0016071; P:mRNA metabolic process; TAS:Reactome.
OntologiesGO GO:0071028; P:nuclear mRNA surveillance; IMP:UniProtKB.
OntologiesGO GO:0000956; P:nuclear-transcribed mRNA catabolic process; IMP:UniProtKB.
OntologiesGO GO:0000288; P:nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay; TAS:Reactome.
OntologiesGO GO:0016070; P:RNA metabolic process; TAS:Reactome.
OntologiesGO GO:0016075; P:rRNA catabolic process; IMP:UniProtKB.
Proteomic databasesMaxQB Q8IZH2; -.
Proteomic databasesPaxDb Q8IZH2; -.
Proteomic databasesPRIDE Q8IZH2; -.
Family and domain databasesInterPro IPR027073; 5_3_exoribonuclease.
Family and domain databasesInterPro IPR016494; 5_3_exoribonuclease_1.
Family and domain databasesInterPro IPR004859; Put_53exo.
Family and domain databasesPANTHER PTHR12341; PTHR12341; 1.
Family and domain databasesPfam PF03159; XRN_N; 1.
Family and domain databasesPIRSF PIRSF006743; Exonuclease_Xnr1; 1.
PTM databasesPhosphoSite Q8IZH2; -.
Protein-protein interaction databasesBioGrid 119970; 73.
Protein-protein interaction databasesDIP DIP-31174N; -.
Protein-protein interaction databasesIntAct Q8IZH2; 25.
Protein-protein interaction databasesSTRING 9606.ENSP00000264951; -.
Enzyme and pathway databasesReactome REACT_20518; mRNA decay by 5' to 3' exoribonuclease.
Enzyme and pathway databasesReactome REACT_24915; Butyrate Response Factor 1 (BRF1) destabilizes mRNA.
Enzyme and pathway databasesReactome REACT_25064; Tristetraprolin (TTP) destabilizes mRNA.
3D structure databasesProteinModelPortal Q8IZH2; -.
3D structure databasesSMR Q8IZH2; 1-600.
Protocols and materials databasesDNASU 54464; -.
Phylogenomic databaseseggNOG COG5049; -.
Phylogenomic databasesGeneTree ENSGT00670000098080; -.
Phylogenomic databasesHOVERGEN HBG094164; -.
Phylogenomic databasesKO K12618; -.
Phylogenomic databasesOMA CKQRKSN; -.
Phylogenomic databasesOrthoDB EOG7S7SCW; -.
Phylogenomic databasesPhylomeDB Q8IZH2; -.
Phylogenomic databasesTreeFam TF105757; -.
Organism-specific databasesCTD 54464; -.
Organism-specific databasesGeneCards GC03M142025; -.
Organism-specific databasesHGNC HGNC:30654; XRN1.
Organism-specific databasesHPA HPA035005; -.
Organism-specific databasesHPA HPA035006; -.
Organism-specific databasesMIM 607994; gene.
Organism-specific databasesneXtProt NX_Q8IZH2; -.
Organism-specific databasesPharmGKB PA134878471; -.
OtherChiTaRS XRN1; human.
OtherGenomeRNAi 54464; -.
OtherNextBio 56731; -.
OtherPRO PR:Q8IZH2; -.



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