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| dms | Dense module searching function |
| dualEval | module selection based on two GWAS datasets |
| moduleChoose | choosing modules using seed gene list |
| PCombine | Combine multiple SNPs for one gene |
| simpleChoose | simply choose the top N modules |
| SNP2Gene.match | Map SNPs to genes |
| statResults | statistic description of the results |
| zn.permutation | Analysis of permutation data to compute nominal P value for each module |