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| chooseModule | Choosing dense modules |
| dmGWAS | dmGWAS_3.0 searches for dense modules in a node- and edge-weighted PPI network. |
| dmGWAS_3.0 | dmGWAS_3.0 searches for dense modules in a node- and edge-weighted PPI network. |
| dms | Dense module search function |
| estimate_lambda | Estimate the parameter lambda |
| generate_edge_weight | Compute edge weight |
| generate_graph | Build background PPI Network |