mutLBSgeneDB |
Gene summary for 102465454 |
Gene summary |
Basic gene Info. | Gene symbol | 102465454 |
Gene name | ||
Synonyms | ||
Cytomap | UCSC genome browser: | |
Type of gene | ||
RefGenes | ||
Description | ||
Modification date | ||
dbXrefs | ||
Protein | UniProt: P56192 go to UniProt's Cross Reference DB Table | |
Expression | CleanEX: HS_102465454 | |
BioGPS: 102465454 | ||
Pathway | NCI Pathway Interaction Database: 102465454 | |
KEGG: 102465454 | ||
REACTOME: 102465454 | ||
Pathway Commons: 102465454 | ||
Context | iHOP: 102465454 | |
ligand binding site mutation search in PubMed: 102465454 | ||
UCL Cancer Institute: 102465454 | ||
Assigned class in mutLBSgeneDB |
Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez |
GO ID | GO Term | PubMed ID |
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Ligand binding site mutations for 102465454 |
Cancer type specific mutLBS sorted by frequency |
LBS | AAchange of nsSNV | Cancer type | # samples |
cf) Cancer type abbreviation. BLCA: Bladder urothelial carcinoma, BRCA: Breast invasive carcinoma, CESC: Cervical squamous cell carcinoma and endocervical adenocarcinoma, COAD: Colon adenocarcinoma, GBM: Glioblastoma multiforme, LGG: Brain lower grade glioma, HNSC: Head and neck squamous cell carcinoma, KICH: Kidney chromophobe, KIRC: Kidney renal clear cell carcinoma, KIRP: Kidney renal papillary cell carcinoma, LAML: Acute myeloid leukemia, LUAD: Lung adenocarcinoma, LUSC: Lung squamous cell carcinoma, OV: Ovarian serous cystadenocarcinoma, PAAD: Pancreatic adenocarcinoma, PRAD: Prostate adenocarcinoma, SKCM: Skin cutaneous melanoma, STAD: Stomach adenocarcinoma, THCA: Thyroid carcinoma, UCEC: Uterine corpus endometrial carcinoma. |
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Protein structure related information for 102465454 |
Relative protein structure stability change (ΔΔE) using Mupro 1.1 Mupro score denotes assessment of the effect of mutations on thermodynamic stability. (ΔΔE<0: mutation decreases stability, ΔΔE>0: mutation increases stability) |
: nsSNV at non-LBS: nsSNV at LBS |
nsSNVs sorted by the relative stability change of protein structure by each mutation Blue: mutations of positive stability change. and red : the most recurrent mutation for this gene. |
LBS | AAchange of nsSNV | Relative stability change | S31 | I30N | -1.5777807 | L29 | I30N | -1.5777807 |
(MuPro1.1: Jianlin Cheng et al., Prediction of Protein Stability Changes for Single-Site Mutations Using Support Vector Machines, PROTEINS: Structure, Function, and Bioinformatics. 2006, 62:1125-1132) |
Structure image for 102465454 from PDB |
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Differential gene expression and gene-gene network for 102465454 |
Differential gene expression between mutated and non-mutated LBS samples in all 16 major cancer types |
Differential co-expressed gene network based on protein-protein interaction data (CePIN) |
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Phenotype information for 102465454 |
Gene level disease information (DisGeNet) |
Disease ID | Disease name | # PubMed | Association type |
Mutation level pathogenic information (ClinVar annotation) |
Allele ID | AA change | Clinical significance | Origin | Phenotype IDs |
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Pharmacological information for 102465454 |
Drug information targeting mutLBSgene (Approved drugs only) |
Drug status | DrugBank ID | Name | Type | Drug structure |
Gene-centered ligand-gene interaction network |
Ligands binding to mutated ligand binding site of 102465454 go to BioLip |
Ligand ID | Ligand short name | Ligand long name | PDB ID | PDB name | mutLBS | I3C | 5-AMINO-2,4,6-TRIIODOISOPHTHALIC ACID | 4bjw | A | L29 S31 |
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Conservation information for LBS of 102465454 |
Multiple alignments for P56192 in multiple species |
LBS | AA sequence | # species | Species | L29 | GRAELLISTVG | 2 | Mus musculus, Bos taurus | L29 | GRAEVLISTVG | 1 | Homo sapiens | L29 | EYASKNLKPEV | 1 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | L29 | SAFSVKVPCEG | 1 | Schizosaccharomyces pombe (strain 972 / ATCC 24843) | L71 | CRYFFLLSGWE | 2 | Homo sapiens, Bos taurus | L71 | CRYFFLLCGWE | 1 | Mus musculus | L71 | LRYVM------ | 1 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | L71 | VSFLY----WK | 1 | Schizosaccharomyces pombe (strain 972 / ATCC 24843) | L72 | RYFFLLSGWEQ | 2 | Homo sapiens, Bos taurus | L72 | RYFFLLCGWEQ | 1 | Mus musculus | L72 | RYVM------- | 1 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | L72 | SFLY----WKQ | 1 | Schizosaccharomyces pombe (strain 972 / ATCC 24843) | R2 | 5 | Homo sapiens, Mus musculus, Bos taurus, Saccharomyces cerevisiae (strain ATCC 204508 / S288c), Schizosaccharomyces pombe (strain 972 / ATCC 24843) | R25 | --ARGRAEVLI | 1 | Homo sapiens | R25 | --ARGRAELLI | 1 | Mus musculus | R25 | --AQGRAELLI | 1 | Bos taurus | R25 | ALALEYASKNL | 1 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | R25 | SIAISAFSVKV | 1 | Schizosaccharomyces pombe (strain 972 / ATCC 24843) | S31 | AELLISTVGPE | 2 | Mus musculus, Bos taurus | S31 | AEVLISTVGPE | 1 | Homo sapiens | S31 | ASKNLKPEVDN | 1 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | S31 | FSVKVPCEGAA | 1 | Schizosaccharomyces pombe (strain 972 / ATCC 24843) |
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