mutLBSgeneDB |
Gene summary for PLXNB1 |
Gene summary |
Basic gene Info. | Gene symbol | PLXNB1 |
Gene name | plexin B1 | |
Synonyms | PLEXIN-B1|PLXN5|SEP | |
Cytomap | UCSC genome browser: 3p21.31 | |
Type of gene | protein-coding | |
RefGenes | NM_001130082.2, NM_002673.5, | |
Description | plexin 5plexin-B1semaphorin receptor SEP | |
Modification date | 20141207 | |
dbXrefs | MIM : 601053 | |
HGNC : HGNC | ||
Ensembl : ENSG00000164050 | ||
HPRD : 03032 | ||
Vega : OTTHUMG00000133527 | ||
Protein | UniProt: O43157 go to UniProt's Cross Reference DB Table | |
Expression | CleanEX: HS_PLXNB1 | |
BioGPS: 5364 | ||
Pathway | NCI Pathway Interaction Database: PLXNB1 | |
KEGG: PLXNB1 | ||
REACTOME: PLXNB1 | ||
Pathway Commons: PLXNB1 | ||
Context | iHOP: PLXNB1 | |
ligand binding site mutation search in PubMed: PLXNB1 | ||
UCL Cancer Institute: PLXNB1 | ||
Assigned class in mutLBSgeneDB | C: This gene just belongs to mutLBSgenes. |
Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez |
GO ID | GO Term | PubMed ID | GO:0007162 | negative regulation of cell adhesion | 15218527 | GO:0008360 | regulation of cell shape | 19843518 | GO:0051493 | regulation of cytoskeleton organization | 19843518 | GO:0071526 | semaphorin-plexin signaling pathway | 15218527 |
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Ligand binding site mutations for PLXNB1 |
Cancer type specific mutLBS sorted by frequency |
LBS | AAchange of nsSNV | Cancer type | # samples | K1720 | D1719Y | COAD | 1 |
cf) Cancer type abbreviation. BLCA: Bladder urothelial carcinoma, BRCA: Breast invasive carcinoma, CESC: Cervical squamous cell carcinoma and endocervical adenocarcinoma, COAD: Colon adenocarcinoma, GBM: Glioblastoma multiforme, LGG: Brain lower grade glioma, HNSC: Head and neck squamous cell carcinoma, KICH: Kidney chromophobe, KIRC: Kidney renal clear cell carcinoma, KIRP: Kidney renal papillary cell carcinoma, LAML: Acute myeloid leukemia, LUAD: Lung adenocarcinoma, LUSC: Lung squamous cell carcinoma, OV: Ovarian serous cystadenocarcinoma, PAAD: Pancreatic adenocarcinoma, PRAD: Prostate adenocarcinoma, SKCM: Skin cutaneous melanoma, STAD: Stomach adenocarcinoma, THCA: Thyroid carcinoma, UCEC: Uterine corpus endometrial carcinoma. |
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Protein structure related information for PLXNB1 |
Relative protein structure stability change (ΔΔE) using Mupro 1.1 Mupro score denotes assessment of the effect of mutations on thermodynamic stability. (ΔΔE<0: mutation decreases stability, ΔΔE>0: mutation increases stability) |
: nsSNV at non-LBS: nsSNV at LBS |
nsSNVs sorted by the relative stability change of protein structure by each mutation Blue: mutations of positive stability change. and red : the most recurrent mutation for this gene. |
LBS | AAchange of nsSNV | Relative stability change | K1720 | D1719Y | -0.68994641 |
(MuPro1.1: Jianlin Cheng et al., Prediction of Protein Stability Changes for Single-Site Mutations Using Support Vector Machines, PROTEINS: Structure, Function, and Bioinformatics. 2006, 62:1125-1132) |
Structure image for PLXNB1 from PDB |
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Differential gene expression and gene-gene network for PLXNB1 |
Differential gene expression between mutated and non-mutated LBS samples in all 16 major cancer types |
Differential co-expressed gene network based on protein-protein interaction data (CePIN) |
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Phenotype information for PLXNB1 |
Gene level disease information (DisGeNet) |
Disease ID | Disease name | # PubMed | Association type |
Mutation level pathogenic information (ClinVar annotation) |
Allele ID | AA change | Clinical significance | Origin | Phenotype IDs |
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Pharmacological information for PLXNB1 |
Gene expression profile of anticancer drug treated cell-lines (CCLE) Heatmap showing the correlation between gene expression and drug response across all the cell-lines. We chose the top 20 among 138 drugs.We used Pearson's correlation coefficient. |
Drug information targeting mutLBSgene (Approved drugs only) |
Drug status | DrugBank ID | Name | Type | Drug structure |
Gene-centered ligand-gene interaction network |
Ligands binding to mutated ligand binding site of PLXNB1 go to BioLip |
Ligand ID | Ligand short name | Ligand long name | PDB ID | PDB name | mutLBS | III | Peptide ligand (UNK,UNK,UNK,UNK,UNK,UNK,UNK,UNK,UNK,UNK,UNK,UNK,UNK,UNK,UNK,UNK,UNK,UNK,UNK,UNK,UNK,UNK,UNK,UNK,UNK,UNK,UNK) | 3hm6 | X | K1720 |
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Conservation information for LBS of PLXNB1 |
Multiple alignments for O43157 in multiple species |
LBS | AA sequence | # species | Species | K1720 | KHQVDKGPVDS | 2 | Homo sapiens, Mus musculus | K1720 | KHQIEKGLVDA | 1 | Drosophila melanogaster | L1923 | YLTRLLSMKGT | 2 | Homo sapiens, Mus musculus | L1923 | YLTRLLATKGT | 1 | Drosophila melanogaster | Q1717 | RGIKHQVDKGP | 2 | Homo sapiens, Mus musculus | Q1717 | KAIKHQIEKGL | 1 | Drosophila melanogaster | T1928 | LSMKGTLQKFV | 2 | Homo sapiens, Mus musculus | T1928 | LATKGTIQKFV | 1 | Drosophila melanogaster |
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