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mutLBSgeneDB |
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| Gene summary for ERAP2 |
 Gene summary |
| Basic gene Info. | Gene symbol | ERAP2 |
| Gene name | endoplasmic reticulum aminopeptidase 2 | |
| Synonyms | L-RAP|LRAP | |
| Cytomap | UCSC genome browser: 5q15 | |
| Type of gene | protein-coding | |
| RefGenes | NM_001130140.1, NM_022350.3, | |
| Description | leukocyte-derived arginine aminopeptidase | |
| Modification date | 20141207 | |
| dbXrefs | MIM : 609497 | |
| HGNC : HGNC | ||
| Ensembl : ENSG00000164308 | ||
| HPRD : 14306 | ||
| Vega : OTTHUMG00000128718 | ||
| Protein | UniProt: Q6P179 go to UniProt's Cross Reference DB Table | |
| Expression | CleanEX: HS_ERAP2 | |
| BioGPS: 64167 | ||
| Pathway | NCI Pathway Interaction Database: ERAP2 | |
| KEGG: ERAP2 | ||
| REACTOME: ERAP2 | ||
| Pathway Commons: ERAP2 | ||
| Context | iHOP: ERAP2 | |
| ligand binding site mutation search in PubMed: ERAP2 | ||
| UCL Cancer Institute: ERAP2 | ||
| Assigned class in mutLBSgeneDB | B: This gene belongs to targetable_mutLBSgenes. | |
| Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez |
| GO ID | GO Term | PubMed ID |
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| Ligand binding site mutations for ERAP2 |
| Lollipop-style diagram of mutations at LBS in amino-acid sequence. We represented ligand binding site mutations only. (You can see big image via clicking.)  : non-synonymous mutation on LBS, Circle size denotes number of samples. |
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| Cancer type specific mutLBS sorted by frequency |
| LBS | AAchange of nsSNV | Cancer type | # samples | E200 | E200Q | BLCA | 1 | E371 | L372P | COAD | 1 | D360 | D360N | COAD | 1 |
| cf) Cancer type abbreviation. BLCA: Bladder urothelial carcinoma, BRCA: Breast invasive carcinoma, CESC: Cervical squamous cell carcinoma and endocervical adenocarcinoma, COAD: Colon adenocarcinoma, GBM: Glioblastoma multiforme, LGG: Brain lower grade glioma, HNSC: Head and neck squamous cell carcinoma, KICH: Kidney chromophobe, KIRC: Kidney renal clear cell carcinoma, KIRP: Kidney renal papillary cell carcinoma, LAML: Acute myeloid leukemia, LUAD: Lung adenocarcinoma, LUSC: Lung squamous cell carcinoma, OV: Ovarian serous cystadenocarcinoma, PAAD: Pancreatic adenocarcinoma, PRAD: Prostate adenocarcinoma, SKCM: Skin cutaneous melanoma, STAD: Stomach adenocarcinoma, THCA: Thyroid carcinoma, UCEC: Uterine corpus endometrial carcinoma. |
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| Protein structure related information for ERAP2 |
| Relative protein structure stability change (ΔΔE) using Mupro 1.1 Mupro score denotes assessment of the effect of mutations on thermodynamic stability. (ΔΔE<0: mutation decreases stability, ΔΔE>0: mutation increases stability) |
 : nsSNV at non-LBS : nsSNV at LBS |
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| nsSNVs sorted by the relative stability change of protein structure by each mutation Blue: mutations of positive stability change. and red : the most recurrent mutation for this gene. |
| LBS | AAchange of nsSNV | Relative stability change | E200 | E200Q | -1.4712258 | E371 | L372P | -1.0348513 | D360 | D360N | -0.31481857 |
| (MuPro1.1: Jianlin Cheng et al., Prediction of Protein Stability Changes for Single-Site Mutations Using Support Vector Machines, PROTEINS: Structure, Function, and Bioinformatics. 2006, 62:1125-1132) |
| Structure image for ERAP2 from PDB |
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| Differential gene expression and gene-gene network for ERAP2 |
| Differential gene expression between mutated and non-mutated LBS samples in all 16 major cancer types |
| Differential co-expressed gene network based on protein-protein interaction data (CePIN) |
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| Phenotype information for ERAP2 |
| Gene level disease information (DisGeNet) |
| Disease ID | Disease name | # PubMed | Association type |
| umls:C0010346 | Crohn Disease | 1 | Biomarker, GeneticVariation |
| Mutation level pathogenic information (ClinVar annotation) |
| Allele ID | AA change | Clinical significance | Origin | Phenotype IDs |
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| Pharmacological information for ERAP2 |
| Gene expression profile of anticancer drug treated cell-lines (CCLE) Heatmap showing the correlation between gene expression and drug response across all the cell-lines. We chose the top 20 among 138 drugs.We used Pearson's correlation coefficient. |
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| Drug information targeting mutLBSgene (Approved drugs only) |
| Drug status | DrugBank ID | Name | Type | Drug structure |
| Gene-centered ligand-gene interaction network |
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| Ligands binding to mutated ligand binding site of ERAP2 go to BioLip |
| Ligand ID | Ligand short name | Ligand long name | PDB ID | PDB name | mutLBS | III | Peptide ligand (2X0,7GA,LYS,HIS,HIS,ALA,PHE,SER,PHE,LYS) | 5ab0 | A | E200 D360 E371 | III | Peptide ligand (2X0,7GA,LYS,HIS,HIS,ALA,PHE,SER,PHE,LYS) | 5ab0 | C | E200 D360 E371 | III | Peptide ligand (GLY,PRO,GLY,ARG,ALA,PHE) | 5ab2 | B | E200 D360 E371 | LYS | LYSINE | 3se6 | A | E200 E371 | LYS | LYSINE | 3se6 | B | E200 E371 | LYS | LYSINE | 4e36 | A | E200 E371 | LYS | LYSINE | 4e36 | B | E200 E371 | P52 | NALPHA-[(2S)-2-{[[(1R)-1-AMINO-3- PHENYLPROPYL](HYDROXY)PHOSPHORYL]METHYL}-4- METHYLPENTANOYL]-L-TRYPTOPHANAMIDE | 4jbs | A | E200 E371 | P52 | NALPHA-[(2S)-2-{[[(1R)-1-AMINO-3- PHENYLPROPYL](HYDROXY)PHOSPHORYL]METHYL}-4- METHYLPENTANOYL]-L-TRYPTOPHANAMIDE | 4jbs | B | E200 E371 | III | Peptide ligand (GLY,PRO,GLY,ARG,ALA,PHE) | 5ab2 | A | E200 E371 |
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| Conservation information for LBS of ERAP2 |
| Multiple alignments for Q6P179 in multiple species |
| LBS | AA sequence | # species | Species |
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