mutLBSgeneDB |
Gene summary for CLEC3B |
Gene summary |
Basic gene Info. | Gene symbol | CLEC3B |
Gene name | C-type lectin domain family 3, member B | |
Synonyms | TN|TNA | |
Cytomap | UCSC genome browser: 3p22-p21.3 | |
Type of gene | protein-coding | |
RefGenes | NM_003278.2, | |
Description | plasminogen kringle 4-binding proteintetranectintetranectin (plasminogen binding protein)tetranectin (plasminogen-binding protein) | |
Modification date | 20141215 | |
dbXrefs | MIM : 187520 | |
HGNC : HGNC | ||
Ensembl : ENSG00000163815 | ||
HPRD : 01759 | ||
Vega : OTTHUMG00000133087 | ||
Protein | UniProt: P05452 go to UniProt's Cross Reference DB Table | |
Expression | CleanEX: HS_CLEC3B | |
BioGPS: 7123 | ||
Pathway | NCI Pathway Interaction Database: CLEC3B | |
KEGG: CLEC3B | ||
REACTOME: CLEC3B | ||
Pathway Commons: CLEC3B | ||
Context | iHOP: CLEC3B | |
ligand binding site mutation search in PubMed: CLEC3B | ||
UCL Cancer Institute: CLEC3B | ||
Assigned class in mutLBSgeneDB | C: This gene just belongs to mutLBSgenes. |
Gene ontology having evidence of Inferred from Direct Assay (IDA) from Entrez |
GO ID | GO Term | PubMed ID | GO:0030282 | bone mineralization | 7798325 |
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Ligand binding site mutations for CLEC3B |
Cancer type specific mutLBS sorted by frequency |
LBS | AAchange of nsSNV | Cancer type | # samples | G168 | G168R | LUSC | 1 | D166 | D166E | SKCM | 1 |
cf) Cancer type abbreviation. BLCA: Bladder urothelial carcinoma, BRCA: Breast invasive carcinoma, CESC: Cervical squamous cell carcinoma and endocervical adenocarcinoma, COAD: Colon adenocarcinoma, GBM: Glioblastoma multiforme, LGG: Brain lower grade glioma, HNSC: Head and neck squamous cell carcinoma, KICH: Kidney chromophobe, KIRC: Kidney renal clear cell carcinoma, KIRP: Kidney renal papillary cell carcinoma, LAML: Acute myeloid leukemia, LUAD: Lung adenocarcinoma, LUSC: Lung squamous cell carcinoma, OV: Ovarian serous cystadenocarcinoma, PAAD: Pancreatic adenocarcinoma, PRAD: Prostate adenocarcinoma, SKCM: Skin cutaneous melanoma, STAD: Stomach adenocarcinoma, THCA: Thyroid carcinoma, UCEC: Uterine corpus endometrial carcinoma. |
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Protein structure related information for CLEC3B |
Relative protein structure stability change (ΔΔE) using Mupro 1.1 Mupro score denotes assessment of the effect of mutations on thermodynamic stability. (ΔΔE<0: mutation decreases stability, ΔΔE>0: mutation increases stability) |
: nsSNV at non-LBS: nsSNV at LBS |
nsSNVs sorted by the relative stability change of protein structure by each mutation Blue: mutations of positive stability change. and red : the most recurrent mutation for this gene. |
LBS | AAchange of nsSNV | Relative stability change | D166 | D166E | 0.14346413 | G168 | G168R | -1.0282597 |
(MuPro1.1: Jianlin Cheng et al., Prediction of Protein Stability Changes for Single-Site Mutations Using Support Vector Machines, PROTEINS: Structure, Function, and Bioinformatics. 2006, 62:1125-1132) |
Structure image for CLEC3B from PDB |
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Differential gene expression and gene-gene network for CLEC3B |
Differential gene expression between mutated and non-mutated LBS samples in all 16 major cancer types |
Differential co-expressed gene network based on protein-protein interaction data (CePIN) |
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Phenotype information for CLEC3B |
Gene level disease information (DisGeNet) |
Disease ID | Disease name | # PubMed | Association type |
Mutation level pathogenic information (ClinVar annotation) |
Allele ID | AA change | Clinical significance | Origin | Phenotype IDs |
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Pharmacological information for CLEC3B |
Gene-centered drug-gene interaction network |
Drug information targeting mutLBSgene (Approved drugs only) |
Drug status | DrugBank ID | Name | Type | Drug structure |
Approved | DB00031 | Tenecteplase | Biotech |
Gene-centered ligand-gene interaction network |
Ligands binding to mutated ligand binding site of CLEC3B go to BioLip |
Ligand ID | Ligand short name | Ligand long name | PDB ID | PDB name | mutLBS |
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Conservation information for LBS of CLEC3B |
Multiple alignments for P05452 in multiple species |
LBS | AA sequence | # species | Species |
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