gene,0,0 GSM1643170,0,32.678 GSM1643171,0,33.921 GSM1643147,0,30.533 GSM1643148,0,21.143 GSM1643172,0,26.76 GSM1643173,0,30.926 GSM1643174,0,30.795 GSM1643175,0,8.206 GSM1643176,0,11.327 GSM1643149,0,8.107 GSM1643150,0,10.592 GSM1643177,0,12.475 GSM1643178,0,37.943 GSM1643179,0,40.996 GSM1643151,0,4.04 GSM1643152,0,4.467 GSM1643157,0,9.632 GSM1643158,0,7.798 GSM1643163,0,7.298 GSM1643164,0,13.123 GSM1643153,0,8.086 GSM1643154,0,14.047 GSM1643143,0,48.467 GSM1643144,0,20.628 GSM1643155,0,55.865 GSM1643156,0,31.635 GSM1643159,0,52.515 GSM1643160,0,44.136 GSM1643165,0,56.465 GSM1643166,0,35.565 GSM1643167,0,38.422 GSM1643168,0,41.905 GSM1643169,0,37.046 GSM1643145,0,104.756 GSM1643146,0,117.816 GSM1643161,0,105.809 GSM1643162,0,96.354
| Synonyms | SPARTIN;TAHCCP1 |
| Description | spastic paraplegia 20 (Troyer syndrome) |
|---|---|
| Chromosome | 13q13.3 |
| Database Reference | MIM:607111 HGNC:18514 HPRD:06170 Vega:OTTHUMG00000016730 |
| See related | THE HUMAN PROTEIN ATLAS |
| Dataset | GSE67259 |
| SPG20 expression in each cell group | Minimum Value (TPM) | Median Value (TPM) | Maximum Value (TPM) |
|---|---|---|---|
| d2 AG+ cells | 32.678 | 33.3 | 33.921 |
| d2 BTAG+ cells | 21.143 | 30.533 | 30.926 |
| d4 AG+ cells | 8.206 | 9.767 | 11.327 |
| d4 BTAG+ cells | 8.107 | 12.475 | 40.996 |
| d6 BTAG+ cells | 4.04 | 6.133 | 9.632 |
| d6 CSM+ cells | 7.298 | 10.21 | 13.123 |
| d8 BTAG+ cells | 8.086 | 11.066 | 14.047 |
| hiPSC | 20.628 | 41.905 | 56.465 |
| iMeLC | 96.354 | 105.283 | 117.816 |
| Comparing SPG20 expression between groups | FDR |
|---|---|
| d4 AG+ cells VS iMeLC | 0.00876605758265638 |
| d4 BTAG+ cells VS d6 BTAG+ cells | NS |
| d4 BTAG+ cells VS d6 CSM+ cells | NS |
| d4 BTAG+ cells VS d8 BTAG+ cells | NS |
| d4 BTAG+ cells VS hiPSC | 0.0415167515545176 |
| d4 BTAG+ cells VS iMeLC | 0.0211757041523991 |
| d6 BTAG+ cells VS d6 CSM+ cells | NS |
| d6 BTAG+ cells VS d8 BTAG+ cells | NS |
| d6 BTAG+ cells VS hiPSC | 0.000145176258144139 |
| d6 BTAG+ cells VS iMeLC | 0.000624929929952226 |
| d6 CSM+ cells VS d8 BTAG+ cells | NS |
| d6 CSM+ cells VS hiPSC | 0.012349837340176 |
| d6 CSM+ cells VS iMeLC | 0.0136469067742765 |
| d8 BTAG+ cells VS hiPSC | 0.0125909435779842 |
| d8 BTAG+ cells VS iMeLC | 0.0127694495897181 |
| hiPSC VS iMeLC | 0.000224946497656929 |
Top correlated genes were calculated by using Spearman rank correlation. Enrichment analysis can be performed on DAVID server using its API, while alternative links are also provided.
KEGG GO Others d2 AG+ cells[2]
d2 BTAG+ cells[5]
d4 AG+ cells[2]
d4 BTAG+ cells[5]
d6 BTAG+ cells[4]
d6 CSM+ cells[2]
d8 BTAG+ cells[2]
hiPSC[11]
iMeLC[4]
