Loading

Cell View

Cell Information

  cultured embryonic stem cells[DCX-][19]

Overall DesignThe transcriptomes of 2684 single cells were profiled by CelSeq at different timepoints throughout a 54-day differentiation protocol that converted H1 human embryonic stem cells to a variety of brain cell types.
SummaryDuring development of the human brain, multiple cell types with diverse regional identities are generated. Here we report a system to generate early human brain forebrain and mid/hindbrain cell types from human embryonic stem cells (hESCs), and infer and experimentally confirm a lineage tree for the generation of these types based on single-cell RNA-Seq analysis. We engineered SOX2Cit/+ and DCXCit/Y hESC lines to target progenitors and neurons throughout neural differentiation for single-cell transcriptomic profiling, then identified discrete cell types consisting of both rostral (cortical) and caudal (mid/hindbrain) identities. Direct comparison of the cell types were made to primary tissues using gene expression atlases and fetal human brain single-cell gene expression data, and this established that the cell types resembled early human brain cell types, including preplate cells. From the single-cell transcriptomic data a Bayesian algorithm generated a unified lineage tree, and predicted novel regulatory transcription factors. The lineage tree highlighted a prominent bifurcation between cortical and mid/hindbrain cell types, confirmed by clonal analysis experiments. We demonstrated that cell types from either branch could preferentially generated by manipulation of the canonical Wnt/beta-catenin pathway. In summary, we present an experimentally validated lineage tree that encompasses multiple brain regions, and our work sheds light on the molecular regulation of region-specific neural lineages during human brain development.
Dataset viewGSE86977
PMIDNA

Samples in cultured embryonic stem cells[DCX-][19]

Displaying 71-80 of 110 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE86977GSM2312351Illumina HiSeq 2500Homo sapiens19Dn2b_A04cultured embryonic stem cells[DCX-][19]
GSE86977GSM2312347Illumina HiSeq 2500Homo sapiens19Dn2b_A05cultured embryonic stem cells[DCX-][19]
GSE86977GSM2312342Illumina HiSeq 2500Homo sapiens19Dn2b_A06cultured embryonic stem cells[DCX-][19]
GSE86977GSM2312357Illumina HiSeq 2500Homo sapiens19Dn2b_A07cultured embryonic stem cells[DCX-][19]
GSE86977GSM2312333Illumina HiSeq 2500Homo sapiens19Dn2b_A08cultured embryonic stem cells[DCX-][19]
GSE86977GSM2312332Illumina HiSeq 2500Homo sapiens19Dn2b_A09cultured embryonic stem cells[DCX-][19]
GSE86977GSM2312331Illumina HiSeq 2500Homo sapiens19Dn2b_A10cultured embryonic stem cells[DCX-][19]
GSE86977GSM2312329Illumina HiSeq 2500Homo sapiens19Dn2b_A11cultured embryonic stem cells[DCX-][19]
GSE86977GSM2312364Illumina HiSeq 2500Homo sapiens19Dn2b_B01cultured embryonic stem cells[DCX-][19]
GSE86977GSM2312358Illumina HiSeq 2500Homo sapiens19Dn2b_B03cultured embryonic stem cells[DCX-][19]

Gene rank in cultured embryonic stem cells[DCX-][19]

Displaying 23621-23630 of 23636 results.
Rank orderGene SymbolEnsembl ID
23621ZEB2-AS1ENSG00000238057
23622ZFX-AS1ENSG00000234230
23623ZNF205-AS1
23624ZNF300P1ENSG00000197083
23625ZNF32-AS1ENSG00000226245
23626ZNF503-AS1ENSG00000226051
23627ZNF645ENSG00000175809
23628ZNF705AENSG00000196946
23629ZNF705DENSG00000215343
23630ZNF705GENSG00000215372