Loading

Cell View

Cell Information

  cultured embryonic stem cells[DCX-][26]

Overall DesignThe transcriptomes of 2684 single cells were profiled by CelSeq at different timepoints throughout a 54-day differentiation protocol that converted H1 human embryonic stem cells to a variety of brain cell types.
SummaryDuring development of the human brain, multiple cell types with diverse regional identities are generated. Here we report a system to generate early human brain forebrain and mid/hindbrain cell types from human embryonic stem cells (hESCs), and infer and experimentally confirm a lineage tree for the generation of these types based on single-cell RNA-Seq analysis. We engineered SOX2Cit/+ and DCXCit/Y hESC lines to target progenitors and neurons throughout neural differentiation for single-cell transcriptomic profiling, then identified discrete cell types consisting of both rostral (cortical) and caudal (mid/hindbrain) identities. Direct comparison of the cell types were made to primary tissues using gene expression atlases and fetal human brain single-cell gene expression data, and this established that the cell types resembled early human brain cell types, including preplate cells. From the single-cell transcriptomic data a Bayesian algorithm generated a unified lineage tree, and predicted novel regulatory transcription factors. The lineage tree highlighted a prominent bifurcation between cortical and mid/hindbrain cell types, confirmed by clonal analysis experiments. We demonstrated that cell types from either branch could preferentially generated by manipulation of the canonical Wnt/beta-catenin pathway. In summary, we present an experimentally validated lineage tree that encompasses multiple brain regions, and our work sheds light on the molecular regulation of region-specific neural lineages during human brain development.
Dataset viewGSE86977
PMIDNA

Samples in cultured embryonic stem cells[DCX-][26]

Displaying 31-40 of 85 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE86977GSM2312706Illumina HiSeq 2500Homo sapiens26Dn1a_C11cultured embryonic stem cells[DCX-][26]
GSE86977GSM2313128Illumina HiSeq 2500Homo sapiens26Dn1a_D02cultured embryonic stem cells[DCX-][26]
GSE86977GSM2313100Illumina HiSeq 2500Homo sapiens26Dn1a_D03cultured embryonic stem cells[DCX-][26]
GSE86977GSM2312744Illumina HiSeq 2500Homo sapiens26Dn1a_D04cultured embryonic stem cells[DCX-][26]
GSE86977GSM2313096Illumina HiSeq 2500Homo sapiens26Dn1a_D05cultured embryonic stem cells[DCX-][26]
GSE86977GSM2313094Illumina HiSeq 2500Homo sapiens26Dn1a_D06cultured embryonic stem cells[DCX-][26]
GSE86977GSM2312754Illumina HiSeq 2500Homo sapiens26Dn1a_D07cultured embryonic stem cells[DCX-][26]
GSE86977GSM2313082Illumina HiSeq 2500Homo sapiens26Dn1a_D08cultured embryonic stem cells[DCX-][26]
GSE86977GSM2313080Illumina HiSeq 2500Homo sapiens26Dn1a_D09cultured embryonic stem cells[DCX-][26]
GSE86977GSM2313079Illumina HiSeq 2500Homo sapiens26Dn1a_D10cultured embryonic stem cells[DCX-][26]

Gene rank in cultured embryonic stem cells[DCX-][26]

Displaying 23601-23610 of 23636 results.
Rank orderGene SymbolEnsembl ID
23601XAGE1C
23602XAGE2B
23603XCL1ENSG00000143184
23604XGPY2
23605XIRP1ENSG00000168334
23606XKENSG00000047597
23607XKR3ENSG00000172967
23608XKRYENSG00000250868
23609XKRY2ENSG00000244646
23610ZANENSG00000146839