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  cultured embryonic stem cells[DCX-][40]

Overall DesignThe transcriptomes of 2684 single cells were profiled by CelSeq at different timepoints throughout a 54-day differentiation protocol that converted H1 human embryonic stem cells to a variety of brain cell types.
SummaryDuring development of the human brain, multiple cell types with diverse regional identities are generated. Here we report a system to generate early human brain forebrain and mid/hindbrain cell types from human embryonic stem cells (hESCs), and infer and experimentally confirm a lineage tree for the generation of these types based on single-cell RNA-Seq analysis. We engineered SOX2Cit/+ and DCXCit/Y hESC lines to target progenitors and neurons throughout neural differentiation for single-cell transcriptomic profiling, then identified discrete cell types consisting of both rostral (cortical) and caudal (mid/hindbrain) identities. Direct comparison of the cell types were made to primary tissues using gene expression atlases and fetal human brain single-cell gene expression data, and this established that the cell types resembled early human brain cell types, including preplate cells. From the single-cell transcriptomic data a Bayesian algorithm generated a unified lineage tree, and predicted novel regulatory transcription factors. The lineage tree highlighted a prominent bifurcation between cortical and mid/hindbrain cell types, confirmed by clonal analysis experiments. We demonstrated that cell types from either branch could preferentially generated by manipulation of the canonical Wnt/beta-catenin pathway. In summary, we present an experimentally validated lineage tree that encompasses multiple brain regions, and our work sheds light on the molecular regulation of region-specific neural lineages during human brain development.
Dataset viewGSE86977
PMIDNA

Samples in cultured embryonic stem cells[DCX-][40]

Displaying 71-80 of 156 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE86977GSM2313607Illumina HiSeq 2500Homo sapiens40Dn2_F02cultured embryonic stem cells[DCX-][40]
GSE86977GSM2313608Illumina HiSeq 2500Homo sapiens40Dn2_B07cultured embryonic stem cells[DCX-][40]
GSE86977GSM2313609Illumina HiSeq 2500Homo sapiens40Dn2_G02cultured embryonic stem cells[DCX-][40]
GSE86977GSM2313610Illumina HiSeq 2500Homo sapiens40Dn2_G07cultured embryonic stem cells[DCX-][40]
GSE86977GSM2313611Illumina HiSeq 2500Homo sapiens40Dn2_H03cultured embryonic stem cells[DCX-][40]
GSE86977GSM2313612Illumina HiSeq 2500Homo sapiens40Dn2_D01cultured embryonic stem cells[DCX-][40]
GSE86977GSM2313613Illumina HiSeq 2500Homo sapiens40Dn2_C11cultured embryonic stem cells[DCX-][40]
GSE86977GSM2313614Illumina HiSeq 2500Homo sapiens40Dn2_F08cultured embryonic stem cells[DCX-][40]
GSE86977GSM2313615Illumina HiSeq 2500Homo sapiens40Dn2_G11cultured embryonic stem cells[DCX-][40]
GSE86977GSM2313616Illumina HiSeq 2500Homo sapiens40Dn2_D05cultured embryonic stem cells[DCX-][40]

Gene rank in cultured embryonic stem cells[DCX-][40]

Displaying 71-80 of 23636 results.
Rank orderGene SymbolEnsembl ID
71RPS3ENSG00000149273
72RPL34ENSG00000109475
73RPS16ENSG00000105193
74MAP1BENSG00000131711
75RPL36ENSG00000130255
76RPS13ENSG00000110700
77H3F3AP4ENSG00000235655
78RPL23ENSG00000125691
79RPS7ENSG00000171863
80RPL30ENSG00000156482