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  glioblastoma [Mes]

Overall DesignOperative specimens from five glioblastoma patients (MGH26, MGH28, MGH29, MGH30, MGH31) were acutely dissociated, depleted for CD45+ inflammatory cells and then sorted as single cells (576 samples). Population controls for each tumor were isolated by sorting 2000-10000 cells and processed in parallel (5 population control samples). Single cells from two established cell lines, GBM6 and GBM8, were also sorted as single cells (192 samples).
SummaryWe report transcriptomes from 430 single glioblastoma cells isolated from 5 individual tumors and 102 single cells from gliomasphere cells lines generated using SMART-seq. In addition, we report population RNA-seq from the five tumors as well as RNA-seq from cell lines derived from 3 tumors (MGH26, MGH28, MGH31) cultured under serum free (GSC) and differentiated (DGC) conditions. This dataset highlights intratumoral heterogeneity with regards to the expression of de novo derived transcriptional modules and established subtype classifiers.
Dataset viewGSE57872
PMID24925914

Samples in glioblastoma [Mes]

Displaying 101-101 of 101 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE57872GSM1395758Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH29_F12glioblastoma [Mes]

Gene rank in glioblastoma [Mes]

Displaying 131-140 of 5942 results.
Rank orderGene SymbolEnsembl ID
131DNAJB1ENSG00000132002
132ATP9BENSG00000166377
133MAPK1IP1LENSG00000168175
134RBMXENSG00000147274
135ERGIC3ENSG00000125991
136PRDX1ENSG00000117450
137RPL8ENSG00000161016
138HIF1AENSG00000100644
139FXYD6ENSG00000137726
140PMP2ENSG00000147588