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  glioblastoma [None]

Overall DesignOperative specimens from five glioblastoma patients (MGH26, MGH28, MGH29, MGH30, MGH31) were acutely dissociated, depleted for CD45+ inflammatory cells and then sorted as single cells (576 samples). Population controls for each tumor were isolated by sorting 2000-10000 cells and processed in parallel (5 population control samples). Single cells from two established cell lines, GBM6 and GBM8, were also sorted as single cells (192 samples).
SummaryWe report transcriptomes from 430 single glioblastoma cells isolated from 5 individual tumors and 102 single cells from gliomasphere cells lines generated using SMART-seq. In addition, we report population RNA-seq from the five tumors as well as RNA-seq from cell lines derived from 3 tumors (MGH26, MGH28, MGH31) cultured under serum free (GSC) and differentiated (DGC) conditions. This dataset highlights intratumoral heterogeneity with regards to the expression of de novo derived transcriptional modules and established subtype classifiers.
Dataset viewGSE57872
PMID24925914

Samples in glioblastoma [None]

Displaying 1-10 of 120 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE57872GSM1395416Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26_B06glioblastoma [None]
GSE57872GSM1395420Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26_B10glioblastoma [None]
GSE57872GSM1395442Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26_D08glioblastoma [None]
GSE57872GSM1395444Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26_D10glioblastoma [None]
GSE57872GSM1395448Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26_E02glioblastoma [None]
GSE57872GSM1395452Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26_E06glioblastoma [None]
GSE57872GSM1395453Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26_E07glioblastoma [None]
GSE57872GSM1395471Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26_G01glioblastoma [None]
GSE57872GSM1395472Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26_G02glioblastoma [None]
GSE57872GSM1395481Illumina HiSeq 2500Homo sapiensSingle cell mRNA-seq_MGH26_G11glioblastoma [None]

Gene rank in glioblastoma [None]

Displaying 11-20 of 5942 results.
Rank orderGene SymbolEnsembl ID
11UBCENSG00000150991
12B2MENSG00000166710
13TMEM45AENSG00000181458
14DDX5ENSG00000108654
15HSPA8ENSG00000109971
16ENO1ENSG00000074800
17H3F3BENSG00000132475
18PSAPENSG00000197746
19PTPRZ1ENSG00000106278
20C6orf62ENSG00000112308