scRNASeqDB - CellView Site

Overall Design	Total 213 H1 single cells and 247 H1-Fucci single cells were sequenced. The 213 H1 cells were used to evaluate Oscope in identifying oscillatory genes. The H1-Fucci cells were used to confirm the cell cycle gene cluster identified by Oscope in the H1 hESCs. Normalized expected counts are provided in GSE64016_H1andFUCCI_normalized_EC.csv.gz
Summary	Oscillatory gene expression is fundamental to mammalian development, but technologies to monitor expression oscillations are limited. We have developed a statistical approach called Oscope to identify and characterize the transcriptional dynamics of oscillating genes in single-cell RNA-seq data from an unsynchronized cell population. Applications to a number of data sets, include a single-cell RNA-seq data set of human embroyonic stem cells (hESCs), demonstrate advantages of the approach and also identify a potential artifact in the Fluidigm C1 platform.
Dataset view	GSE64016
PMID	26301841

Displaying 71-76 of 76 results.

Series	Sample	Instrument	Organism	Title	Cell Source
GSE64016	GSM1562850	Illumina HiSeq 2500	Homo sapiens	G2_Exp1.072	single H1-Fucci cell sorted from G2-M phase of the cell cycle only
GSE64016	GSM1562851	Illumina HiSeq 2500	Homo sapiens	G2_Exp1.073	single H1-Fucci cell sorted from G2-M phase of the cell cycle only
GSE64016	GSM1562852	Illumina HiSeq 2500	Homo sapiens	G2_Exp1.074	single H1-Fucci cell sorted from G2-M phase of the cell cycle only
GSE64016	GSM1562853	Illumina HiSeq 2500	Homo sapiens	G2_Exp1.075	single H1-Fucci cell sorted from G2-M phase of the cell cycle only
GSE64016	GSM1562854	Illumina HiSeq 2500	Homo sapiens	G2_Exp1.076	single H1-Fucci cell sorted from G2-M phase of the cell cycle only
GSE64016	GSM1562855	Illumina HiSeq 2500	Homo sapiens	G2_Exp1.077	single H1-Fucci cell sorted from G2-M phase of the cell cycle only

Displaying 1-10 of 17544 results.