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  single H1 hESC

Overall DesignTotal 213 H1 single cells and 247 H1-Fucci single cells were sequenced. The 213 H1 cells were used to evaluate Oscope in identifying oscillatory genes. The H1-Fucci cells were used to confirm the cell cycle gene cluster identified by Oscope in the H1 hESCs. Normalized expected counts are provided in GSE64016_H1andFUCCI_normalized_EC.csv.gz
SummaryOscillatory gene expression is fundamental to mammalian development, but technologies to monitor expression oscillations are limited. We have developed a statistical approach called Oscope to identify and characterize the transcriptional dynamics of oscillating genes in single-cell RNA-seq data from an unsynchronized cell population. Applications to a number of data sets, include a single-cell RNA-seq data set of human embroyonic stem cells (hESCs), demonstrate advantages of the approach and also identify a potential artifact in the Fluidigm C1 platform.
Dataset viewGSE64016
PMID26301841

Samples in single H1 hESC

Displaying 1-10 of 213 results.
SeriesSampleInstrumentOrganismTitleCell Source
GSE64016GSM1562387Illumina HiSeq 2500Homo sapiensH1_Exp1.001single H1 hESC
GSE64016GSM1562388Illumina HiSeq 2500Homo sapiensH1_Exp1.002single H1 hESC
GSE64016GSM1562389Illumina HiSeq 2500Homo sapiensH1_Exp1.003single H1 hESC
GSE64016GSM1562390Illumina HiSeq 2500Homo sapiensH1_Exp1.004single H1 hESC
GSE64016GSM1562391Illumina HiSeq 2500Homo sapiensH1_Exp1.006single H1 hESC
GSE64016GSM1562392Illumina HiSeq 2500Homo sapiensH1_Exp1.007single H1 hESC
GSE64016GSM1562393Illumina HiSeq 2500Homo sapiensH1_Exp1.008single H1 hESC
GSE64016GSM1562394Illumina HiSeq 2500Homo sapiensH1_Exp1.009single H1 hESC
GSE64016GSM1562395Illumina HiSeq 2500Homo sapiensH1_Exp1.010single H1 hESC
GSE64016GSM1562396Illumina HiSeq 2500Homo sapiensH1_Exp1.011single H1 hESC

Gene rank in single H1 hESC

Displaying 17541-17544 of 17544 results.
Rank orderGene SymbolEnsembl ID
17541EDN2ENSG00000127129
17542CTRB2ENSG00000168928
17543AMELXENSG00000125363
17544ARMC3ENSG00000165309