| Gene Information |
| Gene ID: | | 11122 |
| Symbol: | | PTPRT |
| Full Name: | | protein tyrosine phosphatase, receptor type, T |
| Alias: | | KIAA0283|RPTPrho |
| Organism: | | Homo sapiens (Human) |
| Chromosome: | | 20 |
| Genetic Location: | | 20q12-q13 |
| Physical Location: | | 40134805-41251970 on NC_000020.9, complement |
| Gene Type: | | protein-coding |
| Orthologs: | | This gene has no orthologs in other dataset(s). |
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| Gene in Ethanol Study Datasets |
| Linkage Dataset | | Marker | LOD | P value | Location (bp) | |
| D20S119 | | | 43082264 | | Region: | | 41082264-45082264 | | Phenotype: | | Alcoholism phenotype along with age, gender, and P300 or constraint | | Name: | | 15211641 | | Method: | | Linkage | | Publication: | | Hill et al. Am J Med Genet B Neuropsychiatr Genet. (2004) A genome wide search for alcoholism susceptibility genes. PubMed | | Summary: | | A total of 360 markers for 22 autosomes were spaced at an average distance of 9.4cMand genotyping performed for 330 members of these multiplex families. Extensive clinical data, personality variation, and event-related potential characteristics were available for reducing heterogeneity and detecting robust linkage signals. Multipoint linkage analysis using different analytic strategies give strong support for loci on chromosomes 1, 2, 6, 7, 10, 12, 14, 16, and 17. Thirty five markers with LOD score >2.0 at baseline using the binary alcoholism phenotype along with age, gender, and P300 or constraint (Table III). Here we listed the genes between two near markers or genes near a separate marker (within 2Mb). |
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| Gene Refseq Sequence Annotation |
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| Gene Ontology (GO) Annotation |
| GO ID | GO Term | Category | Evidence (PubMed) | |
| GO:0005887 | integral to plasma membrane | Cellular Component | TAS (9602027) | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0004872 | receptor activity | Molecular Function | IEA | |
| GO:0005001 | transmembrane receptor protein tyrosine phosphatase activity | Molecular Function | TAS (9486824) | |
| GO:0005515 | protein binding | Molecular Function | IPI (16273344) | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0006470 | protein amino acid dephosphorylation | Biological Process | TAS (9602027) | |
| GO:0007169 | transmembrane receptor protein tyrosine kinase signaling pathway | Biological Process | TAS (9486824) | |
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| Other Database Cross Links |
| NCBI Entrez Gene: | | 11122 |
| HGNC: | | 9682 |
| Ensembl: | | ENSG00000196090 |
| MIM: | | 608712 |
| HPRD: | | 06690 |
| HuGE Navigator: | | 11122 |
| dbSNP: | | PTPRT |
| GeneCard: | | PTPRT |
| AceView: | | PTPRT |
